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Related publications (22)

A benchmark dataset for machine learning in ecotoxicology

Kristin Schirmer, Fernando Perez Cruz, Marco Baity-Jesi

The use of machine learning for predicting ecotoxicological outcomes is promising, but underutilized. The curation of data with informative features requires both expertise in machine learning as well as a strong biological and ecotoxicological background, ...

Nature Portfolio2023

Morphology of Nanostructured Tantalum Oxide Controls Stem Cell Differentiation and Improves Corrosion Behavior

Ece Uslu

Tantalum is receiving increasing attention in the biomedical field due to its biocompatible nature and superior mechanical properties. However, the bioinert nature of tantalum still poses a challenge and limits its integration into the bone tissue. To addr ...

Amer Chemical Soc2023

Biological material pooling device for biological or biomolecule purification

Bart Deplancke, Riccardo Dainese, Daniel Alpern

The present invention concerns a biological material pooling device for biological or biomolecule purification comprising a receptacle including a first orifice comprising ordefining a rectangular opening, the receptacle being configured to receive at leas ...

2023

A study model for reconstructing urban ecological niches

Francesco Mondada, Robert Matthew Mills

The Living Arch is a study model that was designed to showcase our ongoing research into bioactive architectural systems to be inhabited by honeybees. The arch is a synergistic combination of 3D printing and active mycelia growth, created for a museum exhi ...

CRC Press2022

Monodisperse Selectively Permeable Hydrogel Capsules Made from Single Emulsion Drops

Huachuan Du, Esther Amstad, Alice Cont, Mathias Steinacher, Alexandre Louis André Persat

Capsules are often used to protect chemical and biological entities from the environment, to control the timing and location of their release, or to facilitate the collection of waste. Their performance depends on the thickness and composition of their she ...

2021

Building biosecurity for synthetic biology

Marie-Valentine Renée Agnès Florin

The fast-paced field of synthetic biology is fundamentally changing the global biosecurity framework. Current biosecurity regulations and strategies are based on previous governance paradigms for pathogen-oriented security, recombinantDNAresearch, and broa ...

2020

Robust Distributed Learning

El Mahdi El Mhamdi

Whether it occurs in artificial or biological substrates, {\it learning} is a {distributed} phenomenon in at least two aspects. First, meaningful data and experiences are rarely found in one location, hence {\it learners} have a strong incentive to work t ...

EPFL2020

A fish intestinal barrier model to assess the interaction with chemicals in vitro

Hannah Inka Schug

The intestinal epithelium acts as vital gate keeper between the fish and its surrounding environment. A single layer of connected epithelial cells forms a selective barrier, which, among other essential functions, is important for nutrient uptake and defen ...

EPFL2019

TransFEr: a new device to measure the transfer of volatile and hydrophobic organic chemicals across an in vitro intestinal fish cell barrier

Kristin Schirmer, Hannah Inka Schug

Transfer of compounds across cellular barriers is a critical step of compound uptake into organisms. Using in vitro barrier systems to evaluate such transfer is attractive because of the higher throughput and reduced resource needs compared to animal studi ...

ROYAL SOC CHEMISTRY2018

Quantitative chemical biosensing by bacterial chemotaxis in microfluidic chips

Harald Van Lintel, Jan Roelof van der Meer, Clémence Roggo

Whole-cell bacterial bioreporters are proposed asalternatives to chemical analysis of, for example, pol-lutants in environmental compartments. Commonlybased on reporter gene induction, bioreporters pro-duce a detectable signal within 30 min to a few hoursa ...

2018

Electronic metal–organic framework sensors

Kyriakos Stylianou, Arunraj Chidambaram

Metal–organic frameworks (MOFs), a class of crystalline and porous materials, are synthesized through the self-assembly of organic ligands and inorganic metal nodes (ions or clusters). For the past few years, MOFs have been in the limelight due to their st ...

2018

Micropollutant removal from municipal wastewater : from conventional treatments to advanced biological processes

Jonas Margot

Many micropollutants present in municipal wastewater, such as pharmaceuticals and pesticides, are poorly removed in conventional wastewater treatment plants (WWTPs), and may generate adverse effects on aquatic life. The objective of this thesis was to stud ...

EPFL2015

Systems Toxicology Approach to Understand the Kinetics of Benzo(a)pyrene Uptake, Biotransformation, and DNA Adduct Formation in a Liver Cell Model

Kristin Schirmer

Cell-based models are important for deriving mechanistic information about stress response pathways that have evolved to protect cells from toxic insult, such as exposure to environmental pollutants. One determinant of the stress response is the amount of ...

Amer Chemical Soc2014

Investigating Alternatives To The Fish Early-Life Stage Test: A Strategy For Discovering And Annotating Adverse Outcome Pathways For Early Fish Development

Kristin Schirmer

The fish early-life stage (FELS) test (Organisation for Economic Co-operation and Development [OECD] test guideline 210) is the primary test used internationally to estimate chronic fish toxicity in support of ecological risk assessments and chemical manag ...

Wiley-Blackwell2014

Sensing Acetylcholine and Anticholinesterase Compounds

Kai Johnsson, Alberto Schena

Acetylcholine is a key neurotransmitter, and anticholinesterase agents are essential compounds used as medical drugs, pesticides, and chemical warfare agents. A semisynthetic fluorescence-based probe for the direct, real-time detection of acetylcholine and ...

Wiley-Blackwell2013

The Insecticide Imidacloprid Causes Mortality of the Freshwater Amphipod Gammarus pulex by Interfering with Feeding Behavior

Kristin Schirmer

If an organism does not feed, it dies of starvation. Even though some insecticides which are used to control pests in agriculture can interfere with feeding behavior of insects and other invertebrates, the link from chemical exposure via affected feeding a ...

Public Library Science2013

Ultrafast (Bio)physical and (Bio)chemical Dynamics

Majed Chergui, Olivier Christian Bräm, Frank van Mourik, Amal El Nahhas, Andrea Cannizzo, Ahmad Ajdar Zadeh Oskouei, Renske Marjan van der Veen, Cristina Consani, Gerald Auböck

We give an overview of our recent work on ultrafast dynamics of chemical (organic dyes, metal-complexes, colloidal quantum dots), and biological (retinal and haem proteins) systems in the liquid phase, studied with a variety of ultrafast optical techniques ...

2011

Methods for Designing Reliable Probe Arrays

Abhishek Garg, Giovanni De Micheli, Luca Benini

Recent advances in biosensing technologies have led to applications of biosensor probe arrays for rapid identification of biological agents such as drugs, gene expressions, proteins, cholesterol and fats in an input sample. However, monitoring the simultan ...

IEEE2010

Chemical, Biological and Ecotoxicological Assessment of Pesticides and Persistent Organic Pollutants in the Bahlui River, in Romania

Luiz Felippe De Alencastro, Kristin Becker van Slooten

Background, aim, and scope Current knowledge on environmental impacts of industrial activities in Romania, particularly persistent organic pollutants (POPs), indicates that environmental standards of the European Union are not systematically met. In our st ...

2009

3D Architecture and Replaceable Layers for Label-Free DNA Biochips

Yusuf Leblebici, Andrea Cavallini, Yüksel Temiz, Sandro Carrara

Recent advances in bio-sensing technologies have led to design of bio-sensor arrays for rapid identification and quantification of various biological agents such as drugs, gene expressions, proteins, cholesterol, fats, etc. Various dedicated sensing arrays ...

2009

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