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Related publications (32)

Gibbs sampling the posterior of neural networks

Giovanni Piccioli, Lenka Zdeborová, Emanuele Troiani

In this paper, we study sampling from a posterior derived from a neural network. We propose a new probabilistic model consisting of adding noise at every pre- and post-activation in the network, arguing that the resulting posterior can be sampled using an ...

Iop Publishing Ltd2024

A ride time-oriented scheduling algorithm for dial-a-ride problems

Nikolaos Geroliminis, Claudia Bongiovanni, Mor Kaspi

This paper offers a new algorithm to efficiently optimize scheduling decisions for dial-a-ride problems (DARPs), including problem variants considering electric and autonomous vehicles (e-ADARPs). The scheduling heuristic, based on linear programming theor ...

Pergamon-Elsevier Science Ltd2024

Generative power of a protein language model trained on multiple sequence alignments

Umberto Lupo, Anne-Florence Raphaëlle Bitbol, Damiano Sgarbossa

Computational models starting from large ensembles of evolutionarily related protein sequences capture a representation of protein families and learn constraints associated to protein structure and function. They thus open the possibility for generating no ...

eLIFE SCIENCES PUBL LTD2023

Bayesian reconstruction of memories stored in neural networks from their connectivity

Florent Gérard Krzakala, Lenka Zdeborová

The advent of comprehensive synaptic wiring diagrams of large neural circuits has created the field of connectomics and given rise to a number of open research questions. One such question is whether it is possible to reconstruct the information stored in ...

2023

Approximation Algorithms for Allocation and Network Design

Etienne Michel François Bamas

In this thesis, we give new approximation algorithms for some NP-hard problems arising in resource allocation and network design. As a resource allocation problem, we study the Santa Claus problem (also known as the MaxMin Fair Allocation problem) in which ...

EPFL2023

Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins

Anne-Florence Raphaëlle Bitbol

Author summaryWhen two protein families interact, their sequences feature statistical dependencies. First, interacting proteins tend to share a common evolutionary history. Second, maintaining structure and interactions through the course of evolution yiel ...

PUBLIC LIBRARY SCIENCE2023

Impact of phylogeny on structural contact inference from protein sequence data

Nicola Dietler, Umberto Lupo, Anne-Florence Raphaëlle Bitbol

Local and global inference methods have been developed to infer structural contacts from multiple sequence alignments of homologous proteins. They rely on correlations in amino acid usage at contacting sites. Because homologous proteins share a common ance ...

ROYAL SOC2023

A continuum approximation approach to the depot location problem in a crowd-shipping system

Nikolaos Geroliminis, Patrick Stefan Adriaan Stokkink

Last-mile delivery in the logistics chain contributes to congestion in urban networks due to frequent stops. Crowd-shipping is a sustainable and low-cost alternative to traditional delivery but relies heavily on the availability of occasional couriers. In ...

PERGAMON-ELSEVIER SCIENCE LTD2023

Hybrid Flock - Formation Control Algorithms

Alcherio Martinoli, Cyrill Silvan Baumann, Jonas Perolini, Emna Tourki

Two prominent categories for achieving coordinated multirobot displacement are flocking and navigation in formation. Both categories have their own body of literature and characteristics, including their respective advantages and disadvantages. While typic ...

Springer Nature Switzerland2022

Beyond Local Optimality of Buffer and Splitter Insertion for AQFP Circuits

Giovanni De Micheli, Heinz Riener, Siang-Yun Lee

Adiabatic quantum-flux parametron (AQFP) is an energy-efficient superconducting technology. Buffer and splitter (B/S) cells must be inserted to an AQFP circuit to meet the technology-imposed constraints on path balancing and fanout branching. These cells a ...

ACM2022

Compressed sensing (CS) MP2RAGE versus standard MPRAGE: A of derived brain volume measurements

Tobias Kober, Tom Hilbert, Gian Franco Piredda

Purpose: T1 Magnetization Prepared Two Rapid Acquisition Gradient Echo (MP2RAGE) with compress sensing (CS) has been proposed as an improvement of the standard MPRAGE sequence with multiple advantages including reduced acquisition time needed to provide a ...

ELSEVIER SCI LTD2022

fGOT: Graph Distances Based on Filters and Optimal Transport

Pascal Frossard, Giovanni Chierchia, Hermina Petric Maretic, Mireille El Gheche

Graph comparison deals with identifying similarities and dissimilarities between graphs. A major obstacle is the unknown alignment of graphs, as well as the lack of accurate and inexpensive comparison metrics. In this work we introduce the filter graph dis ...

ASSOC ADVANCEMENT ARTIFICIAL INTELLIGENCE2022

List Ordered Statistics Decoders for Polar Codes

Andreas Peter Burg, Chuan Zhang, Yifei Shen

The de-facto standard decoding algorithm for polar codes, successive cancellation list (SCL) decoding, is a breadth-first search algorithm. By keeping a list of candidate codewords, SCL decoding improves the performance as the list size L increases. Howeve ...

IEEE2022

An automatized method to determine latencies of motor-evoked potentials under physiological and pathophysiological conditions

Claudia Bigoni, Friedhelm Christoph Hummel, Takuya Morishita, Andéol Geoffroy Cadic-Melchior, Pierre Theopistos Vassiliadis

Background. Latencies of motor evoked potentials (MEPs) can provide insights into the motor neuronal pathways activated by transcranial magnetic stimulation. Notwithstanding its clinical relevance, accurate, unbiased methods to automatize latency detection ...

IOP Publishing Ltd2022

Protein language models trained on multiple sequence alignments learn phylogenetic relationships

Umberto Lupo, Anne-Florence Raphaëlle Bitbol, Damiano Sgarbossa

Self-supervised neural language models with attention have recently been applied to biological sequence data, advancing structure, function and mutational effect prediction. Some protein language models, including MSA Transformer and AlphaFold's EvoFormer, ...

Nature Portfolio2022

Sketches, metrics and fast algorithms

Navid Nouri

As it has become easier and cheaper to collect big datasets in the last few decades, designing efficient and low-cost algorithms for these datasets has attracted unprecedented attention. However, in most applications, even storing datasets as acquired has ...

EPFL2022

Tight Vector Bin Packing with Few Small Items via Fast Exact Matching in Multigraphs

Adam Teodor Polak, Alexandra Anna Lassota

We solve the Bin Packing problem in O^*(2^k) time, where k is the number of items less or equal to one third of the bin capacity. This parameter measures the distance from the polynomially solvable case of only large (i.e., greater than one third) items. O ...

Schloss Dagstuhl – Leibniz-Zentrum fur Informatik2022

Faster Monotone Min-Plus Product, Range Mode, and Single Source Replacement Paths

Adam Teodor Polak

One of the most basic graph problems, All-Pairs Shortest Paths (APSP) is known to be solvable in n^{3-o(1)} time, and it is widely open whether it has an O(n^{3-ε}) time algorithm for ε > 0. To better understand APSP, one often strives to obtain subcubic t ...

Schloss Dagstuhl -- Leibniz-Zentrum für Informatik2021

Femtosecond laser-based optomechanical processes for permanent and high-precision fine alignment of optical systems

Saood Ibni Nazir

Miniaturization has been at the forefront of scientific research in the past decade covering diverse areas such as electronics, mechanics, and optics. While 'small is beautiful' may be a vast generalization, the true benefits of miniaturization are especia ...

EPFL2021

Learning-Augmented Dynamic Power Management with Multiple States via New Ski Rental Bounds

Adam Teodor Polak, Marek Elias

We study the online problem of minimizing power consumption in systems with multiple power-saving states. During idle periods of unknown lengths, an algorithm has to choose between power-saving states of different energy consumption and wake-up costs. We d ...

2021

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