Publications related to Trophic level

Food web structure and energy flux dynamics, but not taxonomic richness, influence microbial ecosystem functions in a Sphagnum-dominated peatland

Alexandre Buttler, Edward Mitchell, Vincent Eric Jules Jassey

Soil microbial communities are vital for multiple ecosystem processes and services. In particular, soil microbial food webs are key determinants of soil biodiversity, functioning and stability. Unclear, however, is how struc-tural features of food webs, su ...

ELSEVIER FRANCE-EDITIONS SCIENTIFIQUES MEDICALES ELSEVIER2023

Iron Reduction in Profundal Sediments of Ultraoligotrophic Lake Tahoe under Oxygen-Limited Conditions

Meret Aeppli

Increased periods of bottom water anoxia in deep temperate lakes due to decreasing frequency and depth of water column mixing in a warming climate may result in the reductive dissolution of iron minerals and increased flux of nutrients from the sediment in ...

2023

High-throughput Microfluidic Platforms for S. cerevisiae Single Cell Studies

Hon Ming Andrew Yip

Cells consume extra-cellular nutrients and resources to maintain cellular fitness. Extra-cellular conditions vary over time. Cellular programs encoded in genes adjust to adapt to the environments. Gene regulatory networks (GRNs) have evolved to be responsi ...

EPFL2022

Kleptoplast distribution, photosynthetic efficiency and sequestration mechanisms in intertidal benthic foraminifera

Anders Meibom, Charlotte Madeleine Nicole Lekieffre, Emmanuelle Geslin, Michael Kühl

Foraminifera are ubiquitously distributed in marine habitats, playing a major role in marine sediment carbon sequestration and the nitrogen cycle. They exhibit a wide diversity of feeding and behavioural strategies (heterotrophy, autotrophy and mixotrophy) ...

SPRINGERNATURE2022

Aerosol acidity and liquid water content regulate the dry deposition of inorganic reactive nitrogen

Athanasios Nenes, Spyros Pandis

Ecosystem productivity is strongly modulated by the atmospheric deposition of inorganic reactive nitrogen (the sum of ammonium and nitrate). The individual contributions of ammonium and nitrate vary considerably over space and time, giving rise to complex ...

Copernicus GmbH2021

The methylome of the model arbuscular mycorrhizal fungus, Rhizophagus irregularis, shares characteristics with early diverging fungi and Dikarya

Natalia Gasilova, Laure Menin

Early-diverging fungi (EDF) are distinct from Dikarya and other eukaryotes, exhibiting high N6-methyldeoxyadenine (6mA) contents, rather than 5-methylcytosine (5mC). As plants transitioned to land the EDF sub-phylum, arbuscular mycorrhizal fungi (AMF; Glom ...

NATURE PORTFOLIO2021

Viral Transfer and Inactivation through Zooplankton Trophic Interactions

Tamar Kohn, Virginie Bachmann, Xavier Fernandez Cassi, Margot Ninon Lauren Olive

Waterborne viruses are responsible for numerous diseases and are abundant in aquatic systems. Understanding the fate of viruses in natural systems has important implications for human health. This research quantifies the uptake of bacteriophage T4 and the ...

2020

Thinking like a consumer: Linking aquatic basal metabolism and consumer dynamics

Tom Ian Battin, Marta Boix Canadell, Janine Rüegg

The increasing availability of high‐frequency freshwater ecosystem metabolism data provides an opportunity to identify links between metabolic regimes, as gross primary production and ecosystem respiration patterns, and consumer energetics with the potenti ...

2021

Hypolimnetic oxygen depletion rates in deep lakes: Effects of trophic state and organic matter accumulation

Alfred Johny Wüest, Robert Vincent Schwefel, Beat Mueller

This study investigated the consumption of oxygen (O-2) in 11 European lakes ranging from 48 m to 372 m deep. In lakes less than similar to 100 m deep, the main pathways for O-2 consumption were organic matter (OM) mineralization at the sediment surface an ...

American Society of Limnology and Oceanography2020

Intracellular competition for nitrogen controls dinoflagellate population density in corals

Anders Meibom, Stéphane Laurent Escrig, Thomas Krüger, Maoz Fine, Julia Marie Jeanne Yvonne Bodin, Maria-Evangelia Giovani

The density of dinoflagellate microalgae in the tissue of symbiotic corals is an important determinant for health and productivity of the coral animal. Yet, the specific mechanism for their regulation and the consequence for coral nutrition are insufficien ...

ROYAL SOC2020

High-throughput DNA barcoding of oligochaetes for abundance-based indices to assess the biological quality of sediments in streams and lakes

Benoît Jean Dominique Ferrari, Régis Lionel Vivien

Aquatic oligochaete communities are valuable indicators of the biological quality of sediments in streams and lakes, but identification of specimens to the species level based on morphological features requires solid expertise in taxonomy and is possible o ...

Nature Research2020

Rapid dark aging of biomass burning as an overlooked source of oxidized organic aerosol

Athanasios Nenes, Spyros Pandis

Oxidized organic aerosol (OOA) is a major component of ambient particulate matter, substantially impacting climate, human health, and ecosystems. OOA is readily produced in the presence of sunlight, and requires days of photooxidation to reach the levels o ...

National Academy of Sciences2020

The Appearance of the Warburg Effect in the Developing Avian Eye Characterized In Ovo: How Neurogenesis Can Remodel Neuroenergetics

Rolf Gruetter, Carole Poitry-Yamate, Antoine Timothée Cherix, Laurent Brodier

PURPOSE. The avian eye is an established model for exploring mechanisms that coordinate morphogenesis and metabolism during embryonic development. Less is known, however, about trafficking of bioenergetic and metabolic signaling molecules that are involved ...

2020

Effects of Sphagnum Leachate on Competitive Sphagnum Microbiome Depend on Species and Time

Alexandre Buttler, Luca Bragazza, Constant Signarbieux, Vincent Eric Jules Jassey, Bjorn Jozef Maria Robroek, Samuel Thomas Gabriel Hamard

Plant specialized metabolites play an important role in soil carbon (C) and nutrient fluxes. Through anti-microbial effects, they can modulate microbial assemblages and associated microbial-driven processes, such as nutrient cycling, so to positively or ne ...

Frontiers Media SA2019

Testing diﬀerent (e)DNA metabarcoding approaches to assess aquatic oligochaete diversity and the biological quality of sediments

Régis Lionel Vivien

Aquatic oligochaetes are important bioindicators of sediment quality in watercourses and lakes, but their morphological identiﬁcation to the species level is challenging and sometimes impossible. The use of DNA barcoding and metabarcoding could greatly fac ...

2019

Responses of permanent grasslands to drought during the plant growing season: combining agronomic, functional and ecophysiological approaches

Amarante Vitra

Extreme summer drought events are predicted to increase in intensity and frequency within the current century. The resulting water scarcity could dramatically impact human activities related to agriculture, due to the strong relationship between precipitat ...

EPFL2019

Modeling metabolic networks of individual bacterial agents in heterogeneous and dynamic soil habitats (IndiMeSH)

Vassily Hatzimanikatis, Meriç Ataman, Dani Or

Natural soil is characterized as a complex habitat with patchy hydrated islands and spatially variable nutrients that is in a constant state of change due to wetting-drying dynamics. Soil microbial activity is often concentrated in sparsely distributed hot ...

2019

Community-based landslide risk reduction: a review of a Red Cross soil bioengineering for resilience program in Honduras

Silvia Hostettler, Antonio D'Acunzi

Effective long-term participation of communities in disaster risk reduction measures in landslide-prone areas continues to be a challenge. This study aims to evaluate the extent to which community-based soil-bioengineering techniques allow for effective mi ...

2019

Impacts of thermal mismatches on chytrid fungus Batrachochytrium dendrobatidis prevalence are moderated by life stage, body size, elevation and latitude

Suzanne Marie Young

Global climate change is increasing the frequency of unpredictable weather conditions; however, it remains unclear how species-level and geographic factors, including body size and latitude, moderate impacts of unusually warm or cool temperatures on diseas ...

WILEY2019

Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels

Tom Ian Battin

Phototrophic biofilms are ubiquitous in freshwater and marine environments where they are critical for biogeochemical cycling, food webs and in industrial applications. In streams, phototrophic biofilms dominate benthic microbial life and harbour an immens ...

Blackwell Publishing Ltd2018