Publications related to Bioindicator

Global emergent responses of stream microbial metabolism to glacier shrinkage

Tom Ian Battin, Hannes Markus Peter, Massimo Bourquin, Nicola Deluigi, Tyler Joe Kohler, Michail Styllas

Most cryospheric ecosystems are energy limited. How their energetics will respond to climate change remains largely unknown. This is particularly true for glacier-fed streams, which interface with the cryosphere and initiate some of Earth's largest river s ...

Nature Portfolio2024

Surfactant Treatment for Efficient Gene Detection of Enteric Viruses and Indicators in Surface Water Concentrated by Ultrafiltration

Shotaro Torii

The hollow fiber ultrafiltration (HFUF)-based microbial concentration method is widely applied for monitoring pathogenic viruses and microbial indicators in environmental water samples. However, the HFUF-based method can co-concentrate substances that inte ...

SPRINGER2023

Influence of Microplastics on Microbial Structure, Function, and Mechanical Properties of Stream Periphyton

Kristin Schirmer, Ahmed Tlili, Renata Behra

Periphyton is a freshwater biofilm composed of prokaryotic and eukaryotic communities that occupy rocks and sediments, forming the base of the food web and playing a key role in nutrient cycling. Given the large surface that periphyton comprises, it may al ...

FRONTIERS MEDIA SA2022

In vitro and in vivo NIR fluorescence lifetime imaging with a time-gated SPAD camera

Edoardo Charbon, Claudio Bruschini, Arin Can Ülkü

Near-infrared (NIR) fluorescence lifetime imaging (FLI) provides a unique contrast mechanism to monitor biological parameters and molecular events in vivo. Single-photon avalanche diode (SPAD) cameras have been recently demonstrated in FLI microscopy (FLIM ...

Optica Publishing Group2022

Wastewater microorganisms impact microbial diversity and important ecological functions of stream periphyton

Kristin Schirmer, Ahmed Tlili

Effluents of wastewater treatment plants can impact microbial communities in the receiving streams. However, little is known about the role of microorganisms in wastewater as opposed to other wastewater constituents, such as nutrients and micropollutants. ...

Pergamon-Elsevier Science Ltd2022

Untersuchung der ökomorphologischen Wirksamkeit von Sedimentzugaben unterhalb von Talsperren [Assessment of the eco-morphological effectiveness of sediment augmentation downstream of dams]

Giovanni De Cesare, Christian Mörtl

The regulation of discharge and the retention of sediments in reservoirs disturb the natural water dynamics in residual flow stretches below reservoirs. However, a dynamic river morphology as well as near-natural hydrological hydrographs are fundamental ...

ETH2021

Effect thresholds of metals in stream sediments based on in situ oligochaete communities

Benoît Jean Dominique Ferrari, Régis Lionel Vivien, Maria del Carmen Casado Martinez

Aquatic oligochaetes, comprising a large number of species showing various degrees of resistance to chemical pollution, are recognized as valuable bioindicators of sediments’ quality. In the Geneva area (Switzerland), oligochaete tools were previously test ...

2020

Assessment of abundance and community composition of benthic macroinvertebrates: recommendations for improved sampling, fixation and extraction of oligochaetes

Benoît Jean Dominique Ferrari, Régis Lionel Vivien

For several decades, the abundance and community structure of benthic macroinvertebrates have been studied to assess the biological quality of aquatic ecosystems. Procedures aiming at studying the whole of macroinvertebrate communities were mainly designed ...

2020

Hydrological and hydraulic solutions for the sustainability of habitat life in human altered streams

Amin Niayifar

In this thesis, I aim to contribute to the research towards improving the sustainability of habitat life in streams affected by anthropogenic activities. With the growing trend of altering natural water regimes due to hydropower operations, irrigation, and ...

EPFL2019

Pepper mild mottle virus as a water quality indicator

Jason Robert Torrey

Pepper mild mottle virus (PMMoV) was recently found to be the most abundant RNA virus in human feces, and is a plant virus belonging to the genus Tobamovirus in the family Virgoviridae. When in human feces, it is of dietary origin from peppers and their pr ...

NATURE PUBLISHING GROUP2018

Simultaneous preservation of the DNA quality, the community composition and the density of freshwater oligochaetes for the development of genetically based biological indices

Régis Lionel Vivien

Introduction. Oligochaetes are recognized as valuable bioindicators of sediment quality in streams and lakes. The development of an oligochaete index based on the identification of specimens using DNA barcodes requires a method for simultaneously preservin ...

2018

Utilisation des communautés d’oligochètes pour l’évaluation de la qualité biologique et du fonctionnement des cours d’eau : un bilan à partir de données genevoises (Suisse)

Régis Lionel Vivien

Use of oligochaete communities for the assessment of the biological quality and the functioning of watercourses : a review of data from the Geneva area (Switzerland). – Oligochaetes are used in some cantons in Switzerland to assess the biological quality o ...

2015

Silver nanoparticle effects on simple stream food webs and ecosystem processes : periphyton-grazer system

Carmen Omayra Gil Allué

With the global nanotechnology market growing rapidly, nanomaterials are being increasingly released into aquatic environments, where they can undergo modifications and sedimentation, which will put benthic organisms at risk. Of particular interest is the ...

EPFL2015

Overlooked persistent and bioaccumulative pollutants in Lake Geneva : their measurement, occurrence, and concentration distribution in the water column and sediments

Saer Samanipour

Persistent and bioaccumulative pollutants (PBPs) are continually introduced into the environment as a part of the massive ongoing chemical production that began several decades ago. The PBPs include several chemical families such as: industrial compounds, ...

EPFL2015

Direct determination of niobium at the low nanogram level in mineral waters and freshwaters

Michaël Bensimon, Montserrat Filella, David-Julien Magnenat

The increasing use of elements such as Nb and Ta in green and information technologies makes it necessary to develop appropriate analytical methods for studying their environmental and ecotoxicological behaviour. This paper describes the first time Nb has ...

Royal Society of Chemistry2014

Ammonia exposure promotes algal biomass in an ombrotrophic peatland

Vincent Eric Jules Jassey

Nitrogen pollution affects many peatlands with consequences for their biodiversity and ecosystem function. Microorganisms control nutrient cycling and constitute most of the biodiversity of peatlands but their response to nitrogen is poorly characterised a ...

Pergamon-Elsevier Science Ltd2013

Modeling of facade leaching in urban catchments

David Andrew Barry, Luca Rossi, Sylvain Coutu, Dario Del Giudice

Building facades are protected from microbial attack by incorporation of biocides within them. Flow over facades leaches these biocides and transports them to the urban environment. A parsimonious water quantity/quality model applicable for engineered urba ...

American Geophysical Union2012

Application of the denaturing gradient gel electrophoresis (DGGE) technique as an efficient diagnostic tool for ciliate communities in soil

Enrique Lara, Alexandre Jousset

Ciliates (or Ciliophora) are ubiquitous organisms which can be widely used as bioindicators in ecosystems exposed to anthropogenic and industrial influences. The evaluation of the environmental impact on soil ciliate communities with methods relying on mor ...

2010

Chemical, Biological and Ecotoxicological Assessment of Pesticides and Persistent Organic Pollutants in the Bahlui River, in Romania

Kristin Becker van Slooten, Luiz Felippe De Alencastro

Background, aim, and scope Current knowledge on environmental impacts of industrial activities in Romania, particularly persistent organic pollutants (POPs), indicates that environmental standards of the European Union are not systematically met. In our st ...

2009