Publications related to Prime knot

Capsizing due to friction-induced twist in the failure of stopper knots

Pedro Miguel Nunes Pereira de Almeida Reis, Paul Johanns

We investigate the failure mechanism of stopper knots, with a particular focus on the figure -8 knot as a representative example. Stopper knots are widely used in climbing, sailing, racket stringing, and sewing to maintain tension in ropes, strings, or thr ...

Elsevier2024

The strength of surgical knots involves a critical interplay between friction and elastoplasticity

Pedro Miguel Nunes Pereira de Almeida Reis, Paul Johanns, Paul Grandgeorge, Changyeob Baek

Knots are the weakest link in surgical sutures, serving as mechanical ligatures between filaments. Exceeding their safe operational limits can cause fatal complications. The empirical nature of present guidelines calls for a predictive understanding of the ...

AMER ASSOC ADVANCEMENT SCIENCE2023

Periodic Motion of Sedimenting Flexible Knots

Giovanni Dietler, Krishnan Thyagarajan, Andrzej Stasiak

We study the dynamics of knotted deformable closed chains sedimenting in a viscous fluid. We show experimentally that trefoil and other torus knots often attain a remarkably regular horizontal toroidal structure while sedimenting, with a number of intertwi ...

APS2018

On chirality of toroidal embeddings of polyhedral graphs

Senja Dominique Barthel

We investigate properties of spatial graphs on the standard torus. It is known that nontrivial embeddings of planar graphs in the torus contain a nontrivial knot or a non-split link due to [2, 3]. Building on this and using the chirality of torus knots and ...

World Scientific Publishing2017

Splines Are Universal Solutions of Linear Inverse Problems with Generalized TV Regularization

Michaël Unser, Julien René Pierre Fageot, John Paul Ward

Splines come in a variety of flavors that can be characterized in terms of some differential operator L. The simplest piecewise-constant model corresponds to the derivative operator. Likewise, one can extend the traditional notion of total variation by con ...

2017

Tuning knot abundance in semiflexible chains with crowders of different sizes: a Monte Carlo study of DNA chains

Giovanni Dietler

We use stochastic simulation techniques to sample the conformational space of linear semiflexible polymers in a crowded medium and study how the knotting properties depend on the crowder size and concentration. The abundance of physical knots in the chains ...

Royal Society of Chemistry2016

Characterization of the Solution of Linear Inverse Problems with Generalized TV Regularization

Michaël Unser

Ill-posed inverse problems are often constrained by imposing a bound on the total variation of the solution. Here, we consider a generalized version of total-variation regularization that is tied to some differential operator L. We then show that the gener ...

OSA2016

Ideal knots and other packing problems of tubes

Henryk Gerlach

This thesis concerns optimal packing problems of tubes, or thick curves, where thickness is defined as follows. Three points on a closed space curve define a circle. Taking the infimum over all radii of pairwise-distinct point triples defines the thickness ...

EPFL2010

Computation and visualization of ideal knot shapes

Mathias Carlen

We investigate numerical simulations and visualizations of the problem of tying a knot in a piece of rope. The goal is to use the least possible rope of a fixed, prescribed radius to tie a particular knot, e.g. a trefoil, a figure eight, and so on. The rop ...

EPFL2010

DNA Topology : A Biophysical Study of DNA Rings, Knots, and Catenanes by Means of Atomic Force Microscopy and Numerical Simulations

Guillaume Witz

This thesis explores different aspects of DNA topology through experimental and numerical techniques. Topology is a vast mathematical field, that deals with the spatial properties of objects undergoing continuous deformations, but here it is restricted to ...

EPFL2010

Scaling properties of DNA knots studied by atomic force microscopy

Erika Ercolini

The main subject of the present thesis is the experimental study of the scaling properties of DNA knots of different complexities by tapping mode atomic force microscopy (AFM) in air. Homo- or heterogeneous mixture of DNA knot types were deposited onto mic ...

EPFL2008

Modélisation mécanique de fils pour la simulation chirurgicale

Lindo Robert Duratti

Minimally Invasive Surgery (MIS) represents one of the major progresses in surgery in the last decade. In general, it is based on the application of small body-cuts through which instruments are inserted into the patient's body allowing the surgeon to carr ...

EPFL2008

Fractal dimension and localization of DNA knots

Giovanni Dietler, Paolo De Los Rios, Guillaume Witz, Erika Ercolini

The scaling properties of DNA knots of different complexities were studied by atomic force microscope. Following two different protocols DNA knots are adsorbed onto a mica surface in regimes of (i) strong binding, that induces a kinetic trapping of the thr ...

American Physical Society2007