Lectures related to Blue Brain Project

The Microcircuits of Striatum in Silico

Explores the reconstruction of a full-scale mouse striatal cellular level model to integrate and interpret striatal data.

Performing a search in the Allen Brain Atlas

Covers the tutorial on performing a search in the Allen Brain Atlas, exploring gene expression data.

Blue Brain Project: Modeling Brain Tissue and Virtual Experiments

Explores the Blue Brain Project's journey from modeling brain tissue to future goals.

In Silico Neuroscience: Data Reproducibility and Reusability

Emphasizes data reproducibility and reusability in in silico neuroscience, focusing on neuroinformatics tools and methods.

Computational Neuroscience: Biophysics & Modeling

Covers the fundamentals of computational neuroscience, focusing on biophysics and modeling.

Overview of the Allen Mouse Brain Atlas

Covers the Allen Mouse Brain Atlas, brain regions, gene expression data, and exploration tools.

Overview of the Allen Developing Mouse Brain Atlas

Covers the Allen Developing Mouse Brain Atlas, detailing brain structures and annotation levels.

Modeling Neuronal Activity

Explores modeling neuronal activity, including firing rates, responses to stimuli, and network behavior.

Brain Visualization: Raytracing

Presents brain visualization using Raytracing technology and covers loading circuits and interpreting results.

Challenge of even bigger models

Explores simulating large-scale neural network models and optimizing memory efficiency in neural simulations using NEURON and CoreNEURON.

HPC Infrastructure: Blue Brain Project

Explores the HPC infrastructure of the Blue Brain Project, including multi-compartment neuron refinement and large-scale data processing.

Brain Simulation Platform: SimUI Tutorial

Covers a tutorial on simulating a hippocampus microcircuit using the user-friendly SimUI.

The Allen Institute Mouse Brain Data

Explores the Allen Institute Mouse Brain data collection and development processes.

Transgenic Mice: Cre-Lines and Optogenetics

Explores transgenic mice, optogenetics, single-cell RNA sequencing, the Allen Brain Atlas, and electrode technologies in neuroscience research.

Integrative Benchmarking: Advancing System Models of Human Intelligence

Explores advancing system models of human intelligence through integrative benchmarking and the importance of Brain-Score for fair model comparisons.

Transcriptonomics in Mouse Virtual Cortex

Delves into using transcriptonomics to study the mouse virtual cortex and classifying cortical neurons.

Simulation Neuroscience: Overview

Series introduces simulation neuroscience, covering neuron reconstruction, circuit building, and data organization.

Connecting the Single Neuron to the Whole Brain

Explores techniques connecting a single neuron to the whole brain through imaging and tissue excision.

CA1 single cell models

Explores the peculiar properties, variability, optimization, and degeneracy of CA1 neurons.

Brain Networks: Modules and Community Structure

Explores brain network modules and community structure, including the natural modular functional connectome, network modularity, and community detection algorithms.