Publications related to Indifference graph

Towards improving full-length ribosome density prediction by bridging sequence and graph-based representations

Pierre Vandergheynst, Felix Naef, Cédric Gobet, Francesco Craighero, Mohan Vamsi Nallapareddy

Translation elongation plays an important role in regulating protein concentrations in the cell, and dysregulation of this process has been linked to several human diseases. In this study, we use data from ribo-seq experiments to model ribosome densities, ...

PMLR2024

ON THE INDEPENDENCE NUMBER OF INTERSECTION GRAPHS OF AXIS-PARALLEL SEGMENTS

Jana Tabea Cslovjecsek

We prove that for any triangle-free intersection graph of n axis-parallel line segments in the plane, the independence number alpha of this graph is at least alpha n/4+ohm(root n). We complement this with a construction of a graph in this class satisfying ...

Carleton Univ, Dept Mathematics & Statistics2023

Results on Sparse Integer Programming and Geometric Independent Sets

Jana Tabea Cslovjecsek

An integer linear program is a problem of the form max{c^T x : Ax=b, x >= 0, x integer}, where A is in Z^(n x m), b in Z^m, and c in Z^n. Solving an integer linear program is NP-hard in general, but there are several assumptions for which it becomes fixed ...

EPFL2023

Maximum Independent Set: Self-Training through Dynamic Programming

Volkan Cevher, Grigorios Chrysos, Efstratios Panteleimon Skoulakis

This work presents a graph neural network (GNN) framework for solving the maximum independent set (MIS) problem, inspired by dynamic programming (DP). Specifically, given a graph, we propose a DP-like recursive algorithm based on GNNs that firstly construc ...

2023

Modeling Structured Data in Attention-based Models

Alireza Mohammadshahi

Natural language processing has experienced significant improvements with the development of Transformer-based models, which employ self-attention mechanism and pre-training strategies. However, these models still present several obstacles. A notable issue ...

EPFL2023

Incompleteness of graph neural networks for points clouds in three dimensions

Michele Ceriotti, Sergey Pozdnyakov

Graph neural networks (GNN) are very popular methods in machine learning and have been applied very successfully to the prediction of the properties of molecules and materials. First-order GNNs are well known to be incomplete, i.e. there exist graphs that ...

IOP Publishing Ltd2022

fGOT: Graph Distances Based on Filters and Optimal Transport

Pascal Frossard, Mireille El Gheche, Hermina Petric Maretic, Giovanni Chierchia

Graph comparison deals with identifying similarities and dissimilarities between graphs. A major obstacle is the unknown alignment of graphs, as well as the lack of accurate and inexpensive comparison metrics. In this work we introduce the filter graph dis ...

ASSOC ADVANCEMENT ARTIFICIAL INTELLIGENCE2022

Graph signal processing tailored for subgraph focus and community structure

Miljan Petrovic

Community structure in graph-modeled data appears in a range of disciplines that comprise network science. Its importance relies on the influence it bears on other properties of graphs such as resilience, or prediction of missing connections. Nevertheless, ...

EPFL2022

iPool--Information-Based Pooling in Hierarchical Graph Neural Networks

Pascal Frossard, Chenglin Li, Xing Gao

With the advent of data science, the analysis of network or graph data has become a very timely research problem. A variety of recent works have been proposed to generalize neural networks to graphs, either from a spectral graph theory or a spatial perspec ...

IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC2022

NICEpath: Finding metabolic pathways in large networks through atom-conserving substrate-product pairs

Vassily Hatzimanikatis, Jasmin Maria Hafner

Motivation: Finding biosynthetic pathways is essential for metabolic engineering of organisms to produce chemicals, biodegradation prediction of pollutants and drugs, and for the elucidation of bioproduction pathways of secondary metabolites. A key step in ...

OXFORD UNIV PRESS2021

Sequential metric dimension for random graphs

Patrick Thiran, Gergely Odor

In the localization game on a graph, the goal is to find a fixed but unknown target node v* with the least number of distance queries possible. In the j-th step of the game, the player queries a single node v_j and receives, as an answer to their query, th ...

2021

Representing graphs through data with learning and optimal transport

Hermina Petric Maretic

Graphs offer a simple yet meaningful representation of relationships between data. This representation is often used in machine learning algorithms in order to incorporate structural or geometric information about data. However, it can also be used in an i ...

EPFL2021

The Schur-Erdos problem for sesmi-algebraic colorings

János Pach

We considerm-colorings of the edges of a complete graph, where each color class is defined semi-algebraically with bounded complexity. The casem= 2 was first studied by Alon et al., who applied this framework to obtain surprisingly strong Ramsey-type resul ...

HEBREW UNIV MAGNES PRESS2020

Ramsey numbers of ordered graphs

Jan Kyncl

An ordered graph is a pair G = (G,

ELECTRONIC JOURNAL OF COMBINATORICS2020

Dynamic pattern recognition in large-scale graphs with applications to social networks

Volodymyr Miz

A graph is a versatile data structure facilitating representation of interactions among objects in various complex systems. Very often these objects have attributes whose measurements change over time, reflecting the dynamics of the system. This general da ...

EPFL2020

Spikyball Sampling: Exploring Large Networks via an Inhomogeneous Filtered Diffusion

Nicolas Aspert, Volodymyr Miz, Benjamin Ricaud

Studying real-world networks such as social networks or web networks is a challenge. These networks often combine a complex, highly connected structure together with a large size. We propose a new approach for large scale networks that is able to automatic ...

2020

Online Distributed Learning Over Graphs With Multitask Graph-Filter Models

Ali H. Sayed, Roula Nassif

In this article, we are interested in adaptive and distributed estimation of graph filters from streaming data. We formulate this problem as a consensus estimation problem over graphs, which can be addressed with diffusion LMS strategies. Most popular grap ...

IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC2020

Ordered Graphs And Large Bi-Cliques In Intersection Graphs Of Curves

János Pach, Istvan Tomon

An ordered graph G(

COMENIUS UNIV2019

Ordered graphs and large bi-cliques in intersection graphs of curves

János Pach, Istvan Tomon

An ordered graph G(

ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD2019

On the Turan number of ordered forests

Gábor Tardos, Istvan Tomon, Dániel József Korándi

An ordered graph H is a simple graph with a linear order on its vertex set. The corresponding Turan problem, first studied by Pach and Tardos, asks for the maximum number ex(

ACADEMIC PRESS INC ELSEVIER SCIENCE2019