Publications related to FAIR data

Transfer learning application of self-supervised learning in ARPES

There is a growing recognition that electronic band structure is a local property of materials and devices, and there is steep growth in capabilities to collect the relevant data. New photon sources, from small-laboratory-based lasers to free electron lase ...

IOP Publishing Ltd2023

E-Scan: Consuming Contextual Data with Model Plugins

Anastasia Ailamaki, Viktor Sanca

Extracting value and insights from increasingly heterogeneous data sources involves multiple systems combining and consuming the data. With multi-modal and context-rich data such as strings, text, videos, or images, the problem of standardizing the data mo ...

2023

Shared metadata for data-centric materials science

Giovanni Pizzi, Ronald Earle Miller, Gian-Marco Rignanese, Carsten Baldauf, Matthias Scheffler, Tristan Bereau

The expansive production of data in materials science, their widespread sharing and repurposing requires educated support and stewardship. In order to ensure that this need helps rather than hinders scientific work, the implementation of the FAIR-data prin ...

Nature Portfolio2023

SKA Science Data Challenge 2: analysis and results

Jean-Paul Richard Kneib, Xin Chen, Frédéric Courbin, Jean-Luc Starck, Emma Elizabeth Tolley, Yi Zhang, Lei Zhang, Hua Zhang, Xiuwei Zhang, Libo Yu, Claudio Gheller, Aymeric Alexandre Galan, Austin Chandler Peel, Mark Thomas Sargent, Yi Wang

The Square Kilometre Array Observatory (SKAO) will explore the radio sky to new depths in order to conduct transformational science. SKAO data products made available to astronomers will be correspondingly large and complex, requiring the application of ad ...

OXFORD UNIV PRESS2023

PSGL-1 is an evolutionarily conserved antiviral restriction factor

Ying Liu, Chao Jiang

The arms race between viruses and their hosts shaped the evolutionary history and the genome composition of both parties. Restriction factors are the first-line antiviral effectors encoded by the host genomes and are often conserved through evolution to pr ...

AMER SOC MICROBIOLOGY2023

Dataset for "Elastocapillary menisci mediate interaction of neighboring structures at the surface of a compliant solid"

John Martin Kolinski

This dataset supports the publication 'Elastocapillary menisci mediate interaction of neighboring structures at the surface of a compliant solid' by Lebo Molefe and John M. Kolinski, Physical Review E, (2023). The data are surface profiles of textured surf ...

Zenodo2023

Research data supporting 'Fiber pumps for wearable fluidic systems'

Herbert Shea, Michael James Henry Smith, Vito Cacucciolo

The dataset supporting 'Fiber pumps for wearable fluidic systems', published in Science in March 2023. In this work, we present a fluidic pump in the form of a flexible and stretchable tube. These tubes - or 'fiber pumps' - can generate significant fluidic ...

2023

Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows

Daniel Keller

Modeling in neuroscience occurs at the intersection of different points of view and approaches. Typically, hypothesis-driven modeling brings a question into focus so that a model is constructed to investigate a specific hypothesis about how the system work ...

2022

An Open-Source Whole Slide Image Registration Workflow at Cellular Precision Using Fiji, QuPath and Elastix

Olivier Burri, Arne Seitz, Romain Guiet, Jessica Sordet, Nicolas René Chiaruttini

Image analysis workflows for Histology increasingly require the correlation and combination of measurements across several whole slide images. Indeed, for multiplexing, as well as multimodal imaging, it is indispensable that the same sample is imaged multi ...

FRONTIERS MEDIA SA2022

Measurement in the Age of Information

Marilyne Andersen, Forrest Simon Webler

Information is the resolution of uncertainty and manifests itself as patterns. Although complex, most observable phenomena are not random and instead are associated with deterministic, chaotic systems. The underlying patterns and symmetries expressed from ...

2022

Contact.engineering-Create, analyze and publish digital surface twins from topography measurements across many scales

Till Junge, Abhijeet Gujrati

The optimization of surface finish to improve performance, such as adhesion, friction, wear, fatigue life, or interfacial transport, occurs largely through trial and error, despite significant advancements in the relevant science. There are three central c ...

IOP Publishing Ltd2022

Quantitative assessment of research data management practice - 2021

Francesco Varrato, Chiara Gabella, Eliane Ninfa Blumer

This survey aims to investigate research data management practices at EPFL and integrate their results into specific academic services. The previous two editions, in collaboration with TU Delft, Cambridge University and Illinois University, were carried ou ...

2022

Making the collective knowledge of chemistry open and machine actionable

Berend Smit, Luc Patiny, Kevin Maik Jablonka

Large amounts of data are generated in chemistry labs-nearly all instruments record data in a digital form, yet a considerable proportion is also captured non-digitally and reported in ways non-accessible to both humans and their computational agents. Chem ...

NATURE PORTFOLIO2022

reference radiance model and result data for an office building near LAX

Stephen William Wasilewski

radiance scene files and metric results generated from high quality referece images for an office building near LAX. contents of lci_tempate.tar.gz: ALLSKIES: 4294 sky conditions generated by write_skydefs.py based on LAX.epw, all ...

Zenodo2022

The Annotated Mozart Sonatas: Score, Harmony, and Cadence

Martin Alois Rohrmeier, Markus Franz Josef Neuwirth, Johannes Hentschel

This article describes a new expert-labelled dataset featuring harmonic, phrase, and cadence analyses of all piano sonatas by W.A. Mozart. The dataset draws on the DCML standard for harmonic annotation and is being published adopting the FAIR principles of ...

2021

Rethinking student-teacher relationships in higher education: a multidimensional approach

Roland John Tormey

Student-teacher relationships play an important role in both teacher and student experiences in higher education and have been found to be linked to learning, classroom management, and to student absenteeism. Although historically conceptualised in terms o ...

2021

Data Management Plans: the Importance of Data Management in the BIG-MAP Project[**]

Nicola Marzari, Giovanni Pizzi, Martin Uhrin, Ivano Eligio Castelli

Open access to research data is increasingly important for accelerating research. Grant authorities therefore request detailed plans for how data is managed in the projects they finance. We have recently developed such a plan for the EU H2020 BIG-MAP proje ...

WILEY-V C H VERLAG GMBH2021

Human mortality at extreme age

Anthony Christopher Davison, Léo Raymond-Belzile

We use a combination of extreme value statistics, survival analysis and computer-intensive methods to analyse the mortality of Italian and French semi-supercentenarians. After accounting for the effects of the sampling frame, extreme-value modelling leads ...

ROYAL SOC2021

Data mining in the context of urban metabolism: A case study of Geneva and Lausanne, Switzerland

Claudia Rebeca Binder Signer, Aristide Henri Roger Athanassiadis, Nicole Sophie Wiedmann

The highest share of the global population lives in cities. The current configuration of the latter requires considerable amounts of resource flows causing the degradation of local and global ecosystems. To face the complexity of these challenges, scientis ...

IOP PUBLISHING LTD2021

NREM sleep stages specifically alter dynamical integration of large-scale brain networks

Dimitri Nestor Alice Van De Ville, Anjali Bagunu Tarun

Functional dissociations in the brain observed during non-rapid eye movement (NREM) sleep have been associated with reduced information integration and impaired consciousness that accompany increasing sleep depth. Here, we explored the dynamical properties ...

CELL PRESS2021