Publications related to Marine viruses

Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods

Understanding the ecological impacts of viruses on natural and engineered ecosystems relies on the accurate identification of viral sequences from community sequencing data. To maximize viral recovery from metagenomes, researchers frequently combine viral ...

Amer Soc Microbiology2024

Surfactant Treatment for Efficient Gene Detection of Enteric Viruses and Indicators in Surface Water Concentrated by Ultrafiltration

Shotaro Torii

The hollow fiber ultrafiltration (HFUF)-based microbial concentration method is widely applied for monitoring pathogenic viruses and microbial indicators in environmental water samples. However, the HFUF-based method can co-concentrate substances that inte ...

SPRINGER2023

What happens to biomass burning-emitted particles in the ocean? A laboratory experimental approach based on their tracers

Christos Panagiotopoulos

Wildfires, controlled burns, and biofuel combustion (biomass burning or BB) are major contributors to particulate matter in the atmosphere and thus have an impact on climate, human health, and ecosystems. Once emitted, the particulate matter derived from B ...

Elsevier2023

Multi-campaign ship and aircraft observations of marine cloud condensation nuclei and droplet concentrations

Athanasios Nenes, Jian Wang

In-situ marine cloud droplet number concentrations (CDNCs), cloud condensation nuclei (CCN), and CCN proxies, based on particle sizes and optical properties, are accumulated from seven field campaigns: ACTIVATE; NAAMES; CAMP(2)EX; ORACLES; SOCRATES; MARCUS ...

NATURE PORTFOLIO2023

Uptake without inactivation of human adenovirus type 2 by Tetrahymena pyriformis ciliates

Tamar Kohn, Margot Ninon Lauren Olive

Human adenoviruses are ubiquitous contaminants of surface water. Indigenous protists may interact with adenoviruses and contribute to their removal from the water column, though the associated kinetics and mechanisms differ between protist species. In this ...

2023

Viral diversity is linked to bacterial community composition in alpine stream biofilms

Tom Ian Battin, Hannes Markus Peter, Paraskevi Pramateftaki, Meriem Bekliz

Biofilms play pivotal roles in fluvial ecosystems, yet virtually nothing is known about viruses in these communities. Leveraging an optimized sample-to-sequence pipeline, we studied the spatiotemporal turnover of dsDNA viruses associated with stream biofil ...

Springer2022

Elucidating the present-day chemical composition, seasonality and source regions of climate-relevant aerosols across the Arctic land surface

Julia Schmale, Imad El Haddad

The Arctic is warming two to three times faster than the global average, and the role of aerosols is not well constrained. Aerosol number concentrations can be very low in remote environments, rendering local cloud radiative properties highly sensitive to ...

IOP Publishing Ltd2022

Soil protist function varies with elevation in the Swiss Alps

Nicolas Jean Philippe Guex, Edward Mitchell, Enrique Lara, Aline Buri

Protists are abundant and play key trophic functions in soil. Documenting how their trophic contributions vary across large environmental gradients is essential to understand and predict how biogeochemical cycles will be impacted by global changes. Here, u ...

2022

A roadmap to understanding diversity and function of coral reef-associated fungi

Claudia Isabella Pogoreutz

Tropical coral reefs are hotspots of marine productivity, owing to the association of reef-building corals with endosymbiotic algae and metabolically diverse bacterial communities. However, the functional importance of fungi, well-known for their contribut ...

OXFORD UNIV PRESS2022

Investigation of new particle formation mechanisms and aerosol processes at Marambio Station, Antarctic Peninsula

Lubna Dada

Understanding chemical processes leading to the formation of atmospheric aerosol particles is crucial to improve our capabilities in predicting the future climate. However, those mechanisms are still inadequately characterized, especially in polar regions. ...

Copernicus GmbH2022

Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams

Tom Ian Battin, Hannes Markus Peter, Susheel Bhanu Busi, Grégoire Marie Octave Edouard Michoud, Leïla Ezzat, Massimo Bourquin, Matteo Tolosano, Tyler Joe Kohler, Stylianos Fodelianakis, Paraskevi Pramateftaki, Vincent Henri De Staercke, Michail Styllas, Martina Andrea Schön

In glacier-fed streams, ecological windows of opportunity allow complex microbial biofilms to develop and transiently form the basis of the food web, thereby controlling key ecosystem processes. Using metagenome-assembled genomes, we unravel strategies tha ...

Springer2022

Toward biocontrol of waterborne pathogens: contributions of protists to virus removal and associated mechanisms

Margot Ninon Lauren Olive

Human viruses are widespread in the water environment and pose a risk to human health. Wastewater effluents represent the main source of viruses discharge in the environment, leading to contamination of aquatic ecosystems. Viral pathogens can persist on th ...

EPFL2022

Annual cycle observations of aerosols capable of ice formation in central Arctic clouds

Julia Schmale, Ivo Fabio Beck

The Arctic is warming faster than anywhere else on Earth, prompting glacial melt, permafrost thaw, and sea ice decline. These severe consequences induce feedbacks that contribute to amplified warming, affecting weather and climate globally. Aerosols and cl ...

Nature Research2022

Changing atmospheric acidity as a modulator of nutrient deposition and ocean biogeochemistry

Athanasios Nenes

Anthropogenic emissions to the atmosphere have increased the flux of nutrients, especially nitrogen, to the ocean, but they have also altered the acidity of aerosol, cloud water, and precipitation over much of the marine atmosphere. For nitrogen, acidity-d ...

AMER ASSOC ADVANCEMENT SCIENCE2021

Fundamental study on microlayer dynamics in nucleate boiling

Lubomír Bures

Dynamics of nucleate boiling are strongly affected by the formation and behaviour of the microlayer, a layer of liquid underneath growing bubbles. As a result of its minute thickness, very high heat fluxes occur within the microlayer and its evaporation co ...

EPFL2021

Nutrient pollution enhances productivity and framework dissolution in algae- but not in coral-dominated reef communities

Nils Rädecker, Hal Hunt Jones II

Ecosystem services provided by coral reefs may be susceptible to the combined effects of benthic species shifts and anthropogenic nutrient pollution, but related field studies are scarce. We thus investigated in situ how dissolved inorganic nutrient enrich ...

2021

Primary and Net Ecosystem Production in a Large Lake Diagnosed From High-Resolution Oxygen Measurements

Alfred Johny Wüest, Camille Roland Marie Minaudo, Bieito Fernandez Castro, Hannah Elisa Chmiel, Shubham Krishna, Pascal Perolo

The rates of gross primary production (GPP), ecosystem respiration (R), and net ecosystem production (NEP) provide quantitative information about the cycling of carbon and energy in aquatic ecosystems. In lakes, metabolic rates are often diagnosed from die ...

American Geophysical Union2021

Viral Metagenomic Content Reflects Seawater Ecological Quality in the Coastal Zone

Grégoire Marie Octave Edouard Michoud, Stylianos Fodelianakis

Viruses interfere with their host's metabolism through the expression of auxiliary metabolic genes (AMGs) that, until now, are mostly studied under large physicochemical gradients. Here, we focus on coastal marine ecosystems and we sequence the viral metag ...

2020

Control of Waterborne Human Viruses by Indigenous Bacteria and Protists Is Influenced by Temperature, Virus Type, and Microbial Species

Tamar Kohn, Margot Ninon Lauren Olive, Anna Carratala Ripolles

Human viruses are ubiquitous contaminants in surface waters, where they can persist over extended periods of time. Among the factors governing their environmental persistence, the control (removal or inactivation) by microorganisms remains poorly understoo ...

2020

Viral Transfer and Inactivation through Zooplankton Trophic Interactions

Tamar Kohn, Virginie Bachmann, Xavier Fernandez Cassi, Margot Ninon Lauren Olive

Waterborne viruses are responsible for numerous diseases and are abundant in aquatic systems. Understanding the fate of viruses in natural systems has important implications for human health. This research quantifies the uptake of bacteriophage T4 and the ...

2020