Publications related to Microbial loop

Treeline displacement may affect lake dissolved organic matter processing at high latitudes and altitudes

Climate change induced shifts in treeline position, both towards higher altitudes and latitudes induce changes in soil organic matter. Eventually, soil organic matter is transported to alpine and subarctic lakes with yet unknown consequences for dissolved ...

Nature Portfolio2024

What happens to biomass burning-emitted particles in the ocean? A laboratory experimental approach based on their tracers

Christos Panagiotopoulos

Wildfires, controlled burns, and biofuel combustion (biomass burning or BB) are major contributors to particulate matter in the atmosphere and thus have an impact on climate, human health, and ecosystems. Once emitted, the particulate matter derived from B ...

Elsevier2023

Vertical distribution and seasonal dynamics of planktonic cyanobacteria communities in a water column of deep mesotrophic Lake Geneva

Tamar Kohn, Stéphane Joost, Oliver Michele Selmoni, Anna Carratala Ripolles, Charlotte Gisèle Weil, Natacha Tofield-Pasche, Hannah Elisa Chmiel, Annie Sandrine Guillaume, Coralie Chappelier

Background: Temperate subalpine lakes recovering from eutrophication in central Europe are experiencing harmful blooms due to the proliferation of Planktothrix rubescens, a potentially toxic cyanobacteria. To optimize the management of cyanobacteria blooms ...

Frontiers Media SA2023

Food web structure and energy flux dynamics, but not taxonomic richness, influence microbial ecosystem functions in a Sphagnum-dominated peatland

Alexandre Buttler, Edward Mitchell, Vincent Eric Jules Jassey

Soil microbial communities are vital for multiple ecosystem processes and services. In particular, soil microbial food webs are key determinants of soil biodiversity, functioning and stability. Unclear, however, is how struc-tural features of food webs, su ...

ELSEVIER FRANCE-EDITIONS SCIENTIFIQUES MEDICALES ELSEVIER2023

The biofilm ecology of proglacial floodplain streams

Jade Brandani

Glacial forelands figure among the most dynamic landscapes on Earth, and their formation is currently accelerating given glacier shrinkage. Draining these forelands are streams hosting unique microbial communities, which have the capacity to impact both th ...

EPFL2023

Soil protist function varies with elevation in the Swiss Alps

Nicolas Jean Philippe Guex, Edward Mitchell, Enrique Lara, Aline Buri

Protists are abundant and play key trophic functions in soil. Documenting how their trophic contributions vary across large environmental gradients is essential to understand and predict how biogeochemical cycles will be impacted by global changes. Here, u ...

2022

Detritus-hosted methanogenesis sustains the methane paradox in an alpine lake

Damien Bouffard, Oscar Rodrigo Sepúlveda Steiner

Accumulation of methane in oxic waters of lakes and the ocean has been widely reported. Despite the importance for the greenhouse gas budget, mechanistic controls of such "methane paradox" remain elusive. Here, we use a combination of CH4 concentration and ...

American Society of Limnology and Oceanography2022

Aerobiology over the Southern Ocean – implications for bacterial colonization of Antarctica

Julia Schmale

Parts of the Antarctic are experiencing dramatic ecosystem change due to rapid and record warming, which may weaken biogeographic boundaries and dispersal barriers, increasing the risks of biological invasions. In this study, we collected air samples from ...

2022

Contrasting Microbiome Dynamics of Putative Denitrifying Bacteria in Two Octocoral Species Exposed to Dissolved Organic Carbon (DOC) and Warming

Nils Rädecker, Claudia Isabella Pogoreutz

Mutualistic nutrient cycling in the coral-algae symbiosis depends on limited nitrogen (N) availability for algal symbionts. Denitrifying prokaryotes capable of reducing nitrate or nitrite to dinitrogen could thus support coral holobiont functioning by limi ...

2022

Viral diversity is linked to bacterial community composition in alpine stream biofilms

Tom Ian Battin, Hannes Markus Peter, Paraskevi Pramateftaki, Meriem Bekliz

Biofilms play pivotal roles in fluvial ecosystems, yet virtually nothing is known about viruses in these communities. Leveraging an optimized sample-to-sequence pipeline, we studied the spatiotemporal turnover of dsDNA viruses associated with stream biofil ...

Springer2022

Global carbon dioxide efflux from rivers enhanced by high nocturnal emissions

Tom Ian Battin, Hannes Markus Peter, Asa Lovisa Viktoria Horgby, Luis Gómez Gener

Carbon dioxide (CO2) emissions to the atmosphere from running waters are estimated to be four times greater than the total carbon (C) flux to the oceans. However, these fluxes remain poorly constrained because of substantial spatial and temporal variabilit ...

2021

Morphogenesis and oxygen dynamics in phototrophic biofilms growing across a gradient of hydraulic conditions

Tom Ian Battin, Hannes Markus Peter, Amin Niayifar, Anna Depetris, Michael Kühl

Biofilms are surface-attached and matrix-enclosed microbial communities that dominate microbial life in numerous ecosystems. Using flumes and automated optical coherence tomography, we studied the morphogenesis of phototrophic biofilms along a gradient of ...

2021

The influence of the crowding assumptions in biofilm simulations

Vassily Hatzimanikatis, Liliana Angeles Martinez

Author summary In nature, many organisms grow in crowded biofilms that protect against stressful conditions, making their control/eradication a challenge. Modeling these microbial systems is a valuable tool for studying the interactions among cells and exp ...

2021

Heterotrophy in the earliest gut: a single-cell view of heterotrophic carbon and nitrogen assimilation in sponge-microbe symbioses

Anders Meibom, Stéphane Laurent Escrig

Sponges are the oldest known extant animal-microbe symbiosis. These ubiquitous benthic animals play an important role in marine ecosystems in the cycling of dissolved organic matter (DOM), the largest source of organic matter on Earth. The conventional vie ...

NATURE PUBLISHING GROUP2020

Modeling the coupled dynamics of stream metabolism and microbial biomass

Tom Ian Battin, Enrico Bertuzzo, Pier Luigi Segatto

Estimating and interpreting ecosystem metabolism remains an important challenge in stream ecology. Here, we propose a novel approach to model, estimate, and predict multiseasonal patterns of stream metabolism (gross primary production [GPP] and ecosystem r ...

American Society of Limnology and Oceanography2020

Patterns in Microbial Assemblages Exported From the Meltwater of Arctic and Sub-Arctic Glaciers

Tyler Joe Kohler

Meltwater streams connect the glacial cryosphere with downstream ecosystems. Dissolved and particulate matter exported from glacial ecosystems originates from contrasting supraglacial and subglacial environments, and exported microbial cells have the poten ...

Frontiers Media SA2020

Delineating the Continuum of Dissolved Organic Matter in Temperate River Networks

Luis Gómez Gener

The origin and reactivity of dissolved organic matter (DOM) have received attention for decades due to the key role DOM plays in global carbon cycling and the ecology of aquatic systems. However, DOM dynamics in river networks remain unresolved, hampered b ...

2020

Heterotrophic Foraminifera Capable of Inorganic Nitrogen Assimilation

Anders Meibom, Charlotte Madeleine Nicole Lekieffre, Emmanuelle Geslin

Nitrogen availability often limits biological productivity in marine systems, where inorganic nitrogen, such as ammonium is assimilated into the food web by bacteria and photoautotrophic eukaryotes. Recently, ammonium assimilation was observed in kleptopla ...

Frontiers Media SA2020

Travel Time and Source Variation Explain the Molecular Transformation of Dissolved Organic Matter in an Alpine Stream Network

Tom Ian Battin, Hannes Markus Peter, Amber Joy Ulseth

Streams and rivers are important components of the carbon cycle as they transport and transform dissolved organic matter (DOM). Using high resolution Fourier transform ion cyclotron resonance mass spectrometry, we studied the spatial distribution of DOM at ...

2020

Optimised biomolecular extraction for metagenomic analysis of microbial biofilms from high-mountain streams

Tom Ian Battin, Hannes Markus Peter, Jade Brandani, Susheel Bhanu Busi, Stylianos Fodelianakis, Paraskevi Pramateftaki

Glacier-fed streams (GFS) are harsh ecosystems dominated by microbial life organized in benthic biofilms, yet the biodiversity and ecosystem functions provided by these communities remain under-appreciated. To better understand the microbial processes and ...

PEERJ INC2020