Publications related to Computer-aided diagnosis

RibSeg v2: A Large-Scale Benchmark for Rib Labeling and Anatomical Centerline Extraction

Jiancheng Yang, Jason Ken Adhinarta, Ming Li

Automatic rib labeling and anatomical centerline extraction are common prerequisites for various clinical applications. Prior studies either use in-house datasets that are inaccessible to communities, or focus on rib segmentation that neglects the clinical ...

Institute of Electrical and Electronics Engineers2024

GANDALF: Graph-based transformer and Data Augmentation Active Learning Framework with interpretable features for multi-label chest Xray classification

Seyedbehzad Bozorgtabar

Informative sample selection in an active learning (AL) setting helps a machine learning system attain optimum performance with minimum labeled samples, thus reducing annotation costs and boosting performance of computer-aided diagnosis systems in the pres ...

Elsevier2024

Fast and Future: Towards Efficient Forecasting in Video Semantic Segmentation

Evann Pierre Guy Courdier

Deep learning has revolutionized the field of computer vision, a success largely attributable to the growing size of models, datasets, and computational power. Simultaneously, a critical pain point arises as several computer vision applications are deploye ...

EPFL2024

Incorporating Projective Geometry into Deep Learning

Michal Jan Tyszkiewicz

In this thesis we explore the applications of projective geometry, a mathematical theory of the relation between 3D scenes and their 2D images, in modern learning-based computer vision systems. This is an interesting research question which contradicts the ...

EPFL2024

Multimodal fusion of liquid biopsy and CT enhances differential diagnosis of early-stage lung adenocarcinoma

Jiancheng Yang, Li Zhang, Jun Lu, Hua Zhong, Yunhua Zhang

This research explores the potential of multimodal fusion for the differential diagnosis of early-stage lung adenocarcinoma (LUAD) (tumor sizes < 2 cm). It combines liquid biopsy biomarkers, specifically extracellular vesicle long RNA (evlRNA) and the comp ...

Nature Portfolio2024

Few-shot Learning for Efficient and Effective Machine Learning Model Adaptation

Arnout Jan J Devos

Machine learning (ML) enables artificial intelligent (AI) agents to learn autonomously from data obtained from their environment to perform tasks. Modern ML systems have proven to be extremely effective, reaching or even exceeding human intelligence. Altho ...

EPFL2024

Deep learning diagnostic and severity-stratification for interstitial lung diseases and chronic obstructive pulmonary disease in digital lung auscultations and ultrasonography: clinical protocol for an observational case-control study

Mary-Anne Hartley, Jonathan Dönz

BackgroundInterstitial lung diseases (ILD), such as idiopathic pulmonary fibrosis (IPF) and non-specific interstitial pneumonia (NSIP), and chronic obstructive pulmonary disease (COPD) are severe, progressive pulmonary disorders with a poor prognosis. Prom ...

BMC2023

Text as a Richer Source of Supervision in Semantic Segmentation Tasks

Devis Tuia, Valérie Zermatten, Lloyd Haydn Hughes, Javiera Francisca Castillo Navarro

This paper introduces TACOSS a text-image alignment approach that allows explainable land cover semantic segmentation by directly integrating semantic concepts encoded from texts. TACOSS combines convolutional neural networks for visual feature extraction ...

The Institute of Electrical and Electronics Engineers, Inc2023

Scale-Aware Test-Time Click Adaptation for Pulmonary Nodule and Mass Segmentation

Jiancheng Yang, Li Zhang, Zhigang Li, Bo Du

Pulmonary nodules and masses are crucial imaging features in lung cancer screening that require careful management in clinical diagnosis. Despite the success of deep learning-based medical image segmentation, the robust performance on various sizes of lesi ...

Springer International Publishing Ag2023

Weakly supervised joint whole-slide segmentation and classification in prostate cancer

Seyedbehzad Bozorgtabar, Maria Gabrani, Guillaume Jaume, Pushpak Pati, Zeineb Ayadi, Kevin Thandiackal

The identification and segmentation of histological regions of interest can provide significant support to pathologists in their diagnostic tasks. However, segmentation methods are constrained by the difficulty in obtaining pixel-level annotations, which a ...

ELSEVIER2023

Discussion of ‘Experimental Evaluation of Algorithm-Assisted Human Decision-Making: Application to Pretrial Public Safety Assessment’, part 2

Mats Julius Stensrud, Aaron Leor Sarvet

Imai et al.(IJGHS) have conducted a timely experiment on evaluating a decision support algorithm. However, we are concerned by their choice of estimands which, even if they appear plausible at first, rely on notions and assumptions for which we cannot ever ...

2023

SAGTTA: SALIENCY GUIDED TEST TIME AUGMENTATION FOR MEDICAL IMAGE SEGMENTATION ACROSS VENDOR DOMAIN SHIFT

Devavrat Tomar, Seyedbehzad Bozorgtabar

Test time augmentation has been shown to be an effective approach to combat domain shifts in deep learning. Despite their promising performance levels, the interpretability of the underlying used models is however low. Saliency maps have been widely used i ...

IEEE2023

Improving Object Detection under Domain Shifts

Vidit Vidit

Object detection plays a critical role in various computer vision applications, encompassing domains like autonomous vehicles, object tracking, and scene understanding. These applica- tions rely on detectors that generate bounding boxes around known object ...

EPFL2023

Novel Methods For Detection And Analysis Of Atypical Aspects In Speech

Julian David Fritsch

Atypical aspects in speech concern speech that deviates from what is commonly considered normal or healthy. In this thesis, we propose novel methods for detection and analysis of these aspects, e.g. to monitor the temporary state of a speaker, diseases tha ...

EPFL2023

Improving the efficiency of identifying malignant pulmonary nodules before surgery via a combination of artificial intelligence CT image recognition and serum autoantibodies

Jiancheng Yang, Yi Ding, Zhen Gao

ObjectiveTo construct a new pulmonary nodule diagnostic model with high diagnostic efficiency, non-invasive and simple to measure. MethodsThis study included 424 patients with radioactive pulmonary nodules who underwent preoperative 7-autoantibody (7-AAB) ...

SPRINGER2022

Graph Representation Learning in Computational Pathology

Guillaume Jaume

Advances in scanning systems have enabled the digitization of pathology slides into Whole-Slide Images (WSIs), opening up opportunities to develop Computational Pathology (CompPath) methods for computer-aided cancer diagnosis and prognosis. CompPath has be ...

EPFL2022

Deep learning-based analysis of multiple sclerosis lesions with high and ultra-high field MRI

Francesco La Rosa

Multiple sclerosis (MS) is the most common demyelinating disease of the central nervous system and affects almost 3 million people worldwide. There is currently no cure for MS, and its symptoms, starting with fatigue and weakness, often progress over time ...

EPFL2022

Automatic pathological speech assessment

Parvaneh Janbakhshi

Many pathologies cause impairments in the speech production mechanism resulting in reduced speech intelligibility and communicative ability. To assist the clinical diagnosis, treatment and management of speech disorders, automatic pathological speech asses ...

EPFL2022

Digital twins for post-earthquake damage assessment of free-standing buildings including damage information

Katrin Beyer, Radhakrishna Achanta, Bryan German Pantoja Rosero, Amir Rezaie

We present a pipeline for the automatic generation of digital twins of free-standing buildings for damage assessment. Our method takes multiple view images of the target building as input and processes them to produce a 3D model in levels of detail (LOD) f ...

2022

Self-supervised Segmentation via Background Inpainting

Pascal Fua, Mathieu Salzmann, Isinsu Katircioglu, Helge Jochen Rhodin, Victor Constantin

While supervised object detection and segmentation methods achieve impressive accuracy, they generalize poorly to images whose appearance significantly differs from the data they have been trained on. To address this when annotating data is prohibitively e ...

2022