Publications related to Primary nutritional groups

What happens to biomass burning-emitted particles in the ocean? A laboratory experimental approach based on their tracers

Wildfires, controlled burns, and biofuel combustion (biomass burning or BB) are major contributors to particulate matter in the atmosphere and thus have an impact on climate, human health, and ecosystems. Once emitted, the particulate matter derived from B ...

Elsevier2023

Growth and persistence of an aerobic microbial community in Wyoming bentonite MX-80 despite anoxic in-situ conditions

Rizlan Bernier-Latmani, Manon Frutschi, Niels Burzan, Roberta Murad Lima

Microbial activity has the potential to enhance the corrosion of high-level radioactive waste disposal canisters, which, in the proposed Swiss deep geological repository, will be embedded in bentonite and placed in the Opalinus Clay rock formation (OPA). T ...

Frontiers Media SA2022

Active lithoautotrophic and methane-oxidizing microbial community in an anoxic, sub-zero, and hypersaline High Arctic spring

Ianina Altshuler

Lost Hammer Spring, located in the High Arctic of Nunavut, Canada, is one of the coldest and saltiest terrestrial springs discovered to date. It perennially discharges anoxic (

2022

The architecture of benthic biofilms - Linking hydraulics to spatially structured processes

Anna Depetris

Biofilms are spatially structured ecosystems, characterized by patterns and architectural features determined by the interplay between endogenous and exogenous processes. As in many other structured ecosystems, the characterization of spatial interactions ...

EPFL2021

Sources and variability of CO 2 in a pre‐alpine stream gravel bar

Tom Ian Battin

Gravel bars (GBs) contribute to carbon dioxide (CO2) emissions from stream corridors, with CO2 concentrations and emissions dependent on prevailing hydraulic, biochemical, and physicochemical onditions. We investigated CO2 concentrations and fluxes across ...

2019

Sequestered Chloroplasts In The Benthic Foraminifer Haynesina Germanica: Cellular Organization, Oxygen Fluxes And Potential Ecological Implications

Charlotte Madeleine Nicole Lekieffre, Emmanuelle Geslin

Haynesina germanica is a coastal benthic foraminifer known to sequester chloroplasts from benthic pennate diatoms. This study investigates its cellular organization, as well as the oxygen consumption and production rates under dark and light conditions. Th ...

2017

Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock

Rizlan Bernier-Latmani, Alexandre Bagnoud

The Opalinus Clay formation will host geological nuclear waste repositories in Switzerland. It is expected that gas pressure will build-up due to hydrogen production from steel corrosion, jeopardizing the integrity of the engineered barriers. In an in situ ...

Nature Research2016

Computational, Structural, and Kinetic Evidence That Vibrio vulnificus FrsA Is Not a Cofactor-Independent Pyruvate Decarboxylase

Ursula Röthlisberger, Elizabeth Claire Brunk

The fermentation-respiration switch (FrsA) protein in Vibrio vulnificus was recently reported to catalyze the cofactor-independent decarboxylation of pyruvate. We now report quantum mechanical/molecular mechenical calculations that examine the energetics o ...

Amer Chemical Soc2013

The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics

Christof Holliger, Julien Maillard, Aamani Rupakula Boyanapalli, Hauke Smidt

Dehalobacter restrictus strain PER-K23 is an obligate organohalide respiring bacterium, which displays extremely narrow metabolic capabilities. It grows only via coupling energy conservation to anaerobic respiration of tetra- and trichloroethene with hydro ...

2013

Genome analysis of Desulfotomaculum kuznetsovii reveals a physiological similarity with Pelotomaculum thermopropionicum

Rizlan Bernier-Latmani

Desulfotomaculum kuznetsovii is a moderately thermophilic member of the polyphyletic spore-forming genus Desulfotomaculum in the family Peptococcaceae. This species is of interest because it originates from deep subsurface thermal mineral water at a depth ...

Genomic Stand Consort2013

Adhesion of thermoplastic polyurethane elastomer to galvanized steel

Véronique Michaud, Basile Golaz

When a thermoplastic polyurethane elastomer (TPU) is co-molded with galvanized steel, the subsequent adhesion and its durability are very sensitive to the chemical bonds created at the interface. Silane coupling primers are known for enhancing adhesion bet ...

Elsevier2011

Long term stabilization of reaction center protein photochemistry by carbon nanotubes

László Forró, Arnaud Magrez, Endre Horvath, Klara Hernadi

The long term stability and the redox interaction between single walled carbon nanotubes (SWNTs) and photosynthetic reaction center proteins (RCs) purified from purple bacterium Rhodobacter sphaeroides R-26 in the SWNT/RC complex has been investigated. The ...

2011

Calorimetry and thermodynamic aspects of heterotrophic, mixotrophic, and phototrophic growth

Urs von Stockar, Ian William Marison

A simple stoichiometric model is proposed linking the biomass yield to the enthalpy and Gibbs energy changes in chemo-heterotrophic, mixotrophic, and photo-autotrophic microbial growth. A comparison with calorimetric experiments on the algae Chlorella vulg ...

2011

How reliable are thermodynamic feasibility statements of biochemical pathways?

Urs von Stockar

The driving force for organo- or lithotrophic growth as well as for each step in the metabolic network is the Gibbs reaction energy. For each enzymic step it must be neg. Thermodn. contributes therefore to the in-silico description of living systems. It ma ...

2005

Comparison between nucleation of pentacene monolayer islands on polymeric and inorganic substrates

Frank Nüesch, Libero Zuppiroli

We present a comparative study of the nucleation and growth of pentacene monolayer islands in the submonolayer regime onto inorganic substrates of SiO2 and sapphire (Al2O3) and organic substrates of poly(methyl-metacrylate) ...

2005