Covers the Boltzmann distribution in statistical thermodynamics, focusing on the harmonic oscillator system and analyzing state occupancy with varying temperatures.
Explores energy conservation in Hamiltonian systems, numerical integration, time step choices, and constraint algorithms in molecular dynamics simulations.
Covers classical force fields, molecular dynamics simulations, and supramolecular properties, including intramolecular and intermolecular interactions.
Covers theory and practical applications of protein folding simulations using molecular dynamics, focusing on solvent effects and analysis of folding dynamics.
Covers the basics of molecular dynamics simulations, ensemble properties, classical mechanics formulations, numerical integration, energy conservation, and constraint algorithms.
Explores numerical integration algorithms, configurational space integrals, Maxwell-Boltzmann Distribution, and importance sampling in ensemble averages.
