Lectures related to Molecular Dynamics Simulations: Basics and Algorithms

Molecular dynamics under constraints

Explores molecular dynamics simulations under holonomic constraints, focusing on numerical integration and algorithm formulation.

Molecular Dynamics and Monte Carlo

Covers computational methods for molecular systems at finite temperature, emphasizing stochastic sampling and time evolution simulations.

Monte Carlo Simulation Basics

Covers Monte Carlo simulation basics, statistical averages, phase space, integrals evaluation, and numerical simulations.

Molecular Dynamics Simulations: Energy Conservation

Explores energy conservation in Hamiltonian systems, numerical integration, time step choices, and constraint algorithms in molecular dynamics simulations.

Thermodynamic Systems: First Principle and Applications

Covers thermodynamic systems, the first principle, and their applications in physics.

Monte Carlo Simulations

Covers Monte Carlo simulations, ensemble properties, and numerical integration techniques.

Classical Molecular Dynamics: Simulation and Integration Algorithms

Explores classical molecular dynamics simulations, integration algorithms, and trajectory accuracy.

Thermodynamics Basics

Introduces the fundamental concepts of thermodynamics, including energy conservation, system definitions, and different forms of work.

Thermodynamic Systems: Basics

Covers the basics of thermodynamic systems, energy transfer, state functions, forms of work, and energy conservation.

Molecular dynamics and integrators

Explores molecular dynamics, integrators, trajectory generation, and error monitoring in atomistic modeling.

Statistical Definition of Entropy: Microstates and Macrostates

Covers microstates, macrostates, entropy, and density of states in statistical mechanics.

Thermodynamic Transformations and Entropy

Explores thermodynamic transformations of ideal gases, heat capacity, entropy, and adiabatic processes.

Ensembles and Partition Functions

Covers ensembles, partition functions, and distributions in statistical thermodynamics.

Hamiltonian Formulation and Equivalence with Euler-Lagrange

Explores Hamiltonian formulation and its equivalence with Euler-Lagrange equations, illustrated through examples.

Mechanics: Equilibrium Points and Stability

Explores equilibrium points and stability in mechanical systems, analyzing how systems return to or move away from their positions after disturbances.

Thermodynamic Functions and Equilibria: Mathematical Tools

Discusses thermodynamic functions, their mathematical tools, and key relationships between state variables in thermodynamics.

Constraints and Lagrange

Covers constraints, Lagrange equations, generalized coordinates, cyclic coordinates, conservation laws, and Hamilton formalism.

Molecular dynamics: Integrating Newton's equations

Explores molecular dynamics, integrating Newton's equations to make atoms move according to interatomic forces.

Conservation of Total Energy

Explores the conservation of total energy in systems with time-independent potential energy, demonstrating its constancy and importance in verifying numerical integration accuracy.

Canonical Transformations in Analytical Mechanics

Explores canonical transformations, conservation of quantities, and differential equations in analytical mechanics.