Lectures related to Using AGEA in the Allen Mouse Brain Atlas

Data available from the Allen human brain atlases

Covers the data available from the Allen human brain atlases, including gene expression analysis and the BrainSpan Atlas.

Transgenic Mice: Cre-Lines and Optogenetics

Covers transgenic mice using Cre-lines and optogenetics, exploring neural cell manipulation techniques and brain region-specific gene expression.

Performing a search in the Allen Brain Atlas

Covers the tutorial on performing a search in the Allen Brain Atlas, exploring gene expression data.

How to Interpret Gene Expression Heat Maps

Offers a tutorial on interpreting gene expression heat maps from the Allen Institute.

BrainSpan Atlas of Developing Human Brain

Covers the BrainSpan Atlas, mapping gene expression in the developing human brain.

Bulk Transcriptome Analysis: RNA-seq Workflow and Gene Expression Analysis

Explains transcriptomics, RNA-seq workflow, and gene expression analysis for disease biomarkers.

Overview of the Allen Mouse Brain Atlas

Covers the Allen Mouse Brain Atlas, brain regions, gene expression data, and exploration tools.

Gene Expression: Introduction and Data Analysis

Covers gene expression data quantification, genome analysis, and large-scale studies.

Single-cell and Spatially Resolved RNA-seq

Explores single-cell RNA-seq, tissue dissociation, capture methods, and differential gene expression analysis.

Methods to Identify Transcriptomic Types

Covers methods to identify transcriptomic types and classify bipolar cells using computational techniques and molecular profiling.

The Molecules of Life: Nucleic Acids

Covers the structure and functions of nucleic acids, including genetic information storage and gene expression.

Genetic Circuits: Synthetic Biology

Explores genetic circuits design in synthetic biology, from regulatory mechanisms to plasmid construction.

Alternative Splicing: From RNA to Protein

Explores alternative splicing in gene expression to create diverse proteins.

Single-cell Temporal-Omics: Inference of Transcriptional Dynamics

On Single-cell Temporal-Omics explores inferring transcriptional dynamics from snapshot data and interpreting RNA velocity in RNA metabolism.

Allen Human Brain Atlas: Basic Search and Visualization Functions

Offers a tutorial on the Allen Human Brain Atlas for searching and visualizing gene expression data.

Early Life Modulators of Aging and Age-Associated Diseases

Delves into the effects of early-life oxidative stress on lifespan and age-related diseases in C. elegans.

DNA Structure and Transcription

Explores DNA structure, replication, transcription, mRNA translation, and gene expression regulation.

Combining profiles: Electrical, Morphological, Molecular

Covers combining electrical, morphological, and molecular profiles to study single neurons.

Neuroepigenetics: Chromatin Regulation and Memory Formation

Delves into chromatin regulation's role in memory formation, genetic and epigenetic influences on learning, and the potential of HDAC inhibitors as cognitive enhancers.

Protein Life Cycle

Covers gene expression, protein life cycle, and genetic code in neuroscience.