Publications by Petr Leiman | EPFL Graph Search

Structure and Function of the T4 Spackle Protein Gp61.3

The bacteriophage T4 genome contains two genes that code for proteins with lysozyme activity-e and 5. Gene e encodes the well-known T4 lysozyme (commonly called T4L) that functions to break the peptidoglycan layer late in the infection cycle, which is requ ...

2020

Structure and transformation of bacteriophage A511 baseplate and tail upon infection of Listeria cells

Petr Leiman, Sergey Nazarov, Ricardo Cesar Guerrero Ferreira

Contractile injection systems (bacteriophage tails, type VI secretions system, R-type pyocins, etc.) utilize a rigid tube/contractile sheath assembly for breaching the envelope of bacterial and eukaryotic cells. Among contractile injection systems, bacteri ...

WILEY2019

Structure and Function of the Branched Receptor-Binding Complex of Bacteriophage CBA120

Petr Leiman, Sergii Buth, Sergey Nazarov, Michel Plattner, Nikolai Prokhorov

Bacteriophages recognize their host cells with the help of tail fiber and tailspike proteins that bind, cleave, or modify certain structures on the cell surface. The spectrum of ligands to which the tail fibers and tailspikes can bind is the primary determ ...

Academic Press Ltd- Elsevier Science Ltd2019

Structure and Analysis of R1 and R2 Pyocin Receptor-Binding Fibers

Petr Leiman, Sergii Buth

The R-type pyocins are high-molecular weight bacteriocins produced by some strains of Pseudomonas aeruginosa to specifically kill other strains of the same species. Structurally, the R-type pyocins are similar to simple contractile tails, such as those of ...

2018

Genetic, structural and phenotypic properties of MS2 coliphage with resistance to ClO2 disinfection

Virginie Bachmann, Tamar Kohn, Qingxia Zhong, Petr Leiman, Sergey Nazarov, Anna Carratala Ripolles, Laura Piccinini, Ricardo Cesar Guerrero Ferreira

Common water disinfectants like chlorine have been reported to select for resistant viruses, yet little attention has been devoted to characterizing disinfection resistance. Here, we investigated the resistance of MS2 coliphage to inactivation by chlorine ...

Amer Chemical Soc2016

Structure of the T4 baseplate and its function in triggering sheath contraction

Henning Paul-Julius Stahlberg, Petr Leiman, Christopher Browning, Ricardo Cesar Guerrero Ferreira, Nikolai Prokhorov

Several systems, including contractile tail bacteriophages, the type VI secretion system and R-type pyocins, use a multiprotein tubular apparatus to attach to and penetrate host cell membranes. This macromolecular machine resembles a stretched, coiled spri ...

Nature Publishing Group2016

Structure and Biophysical Properties of a Triple-Stranded Beta-Helix Comprising the Central Spike of Bacteriophage T4

Laure Menin, Petr Leiman, Sergii Buth

Gene product 5 (gp5) of bacteriophage T4 is a spike-shaped protein that functions to disrupt the membrane of the target cell during phage infection. Its C-terminal domain is a long and slender -helix that is formed by three polypeptide chains wrapped aroun ...

Mdpi Ag2015

Structure and biochemical characterization of bacteriophage phi92 endosialidase

Petr Leiman, Christopher Browning

Surface-associated capsular polysaccharides (CPSs) protect bacteria against phage infection and enhance pathogenicity by interfering with the function of the host innate immune system. The CPS of enteropathogenic Escherichia coli K92 is a unique sialic aci ...

Academic Press Inc Elsevier Science2015

Atomic structures of a bactericidal contractile nanotube in its pre- and postcontraction states

Petr Leiman, Peng Ge

R-type pyocins are representatives of contractile ejection systems, a class of biological nanomachines that includes, among others, the bacterial type VI secretion system (T6SS) and contractile bacteriophage tails. We report atomic models of the Pseudomona ...

Nature Publishing Group2015

Structure and properties of the C-terminal beta-helical domain of VgrG protein from Escherichia coli O157

Petr Leiman

The bacterial Type 6 secretion system (T6SS) translocates protein toxins (also called effectors) from the cytosol of a T6SS-carrying cell to a target cell by a syringe-like supramolecular complex resembling a contractile tail of bacteriophages. Valine-glyc ...

Oxford University Press2014

Listeria phage A511, a model for the contractile tail machineries of SPO1-related bacteriophages

Petr Leiman

Recognition of the bacterial host and attachment to its surface are two critical steps in phage infection. Here we report the identification of Gp108 as the host receptor-binding protein of the broad host-range, virulent Listeria phage A511. The ligands fo ...

Wiley-Blackwell2014

Bicyclic peptide ligands pulled out of cysteine-rich peptide libraries

Christian Heinis, Jeremy Touati, Petr Leiman, Shiyu Chen, Julia Morales Sanfrutos, Inmaculada Rentero Rebollo

Bicyclic peptide ligands were found to have good binding affinity and target specificity. However, the method applied to generate bicyclic ligands based on phage-peptide alkylation is technically complex and limits its application to specialized laboratori ...

2013

PAAR-repeat proteins sharpen and diversify the type VI secretion system spike

Petr Leiman, Sergii Buth

The bacterial type VI secretion system (T6SS) is a large multicomponent, dynamic macromolecular machine that has an important role in the ecology of many Gram-negative bacteria. T6SS is responsible for translocation of a wide range of toxic effector molecu ...

Nature Publishing Group2013

Phage Pierces the Host Cell Membrane with the Iron-Loaded Spike

Petr Leiman, Christopher Browning

Bacteriophages with contractile tails and the bacterial type VI secretion system have been proposed to use a special protein to create an opening in the host cell membrane during infection. These proteins have a modular architecture but invariably contain ...

2012

Contractile Tail Machines of Bacteriophages

Petr Leiman

Bacteriophages with contractile tails epitomize the concepts of "virus" and "phage" for many because the tails of these phages undergo a large conformational change - resembling the action of a syringe - upon the attachment to the host cell. The contractil ...

2012

Crystal structure and location of gp131 in the bacteriophage phiKZ virion

Petr Leiman, Lada Sycheva

Pseudomonas phage phi KZ and its two close relatives phi PA3 and 201 phi 2-1 are very large bacteriophages that form a separate branch in phage classification because their genomes are very different from the rest of GenBank sequence data. The contractile ...

Elsevier2012

A Multivalent Adsorption Apparatus Explains the Broad Host Range of Phage phi92: a Comprehensive Genomic and Structural Analysis

Petr Leiman, Christopher Browning, Sergey Nazarov

Bacteriophage phi92 is a large, lytic myovirus isolated in 1983 from pathogenic Escherichia coli strains that carry a polysialic acid capsule. Here we report the genome organization of phi92, the cryoelectron microscopy reconstruction of its virion, and th ...

American Society for Microbiology2012

The Baseplate Wedges of Bacteriophage T4 Spontaneously Assemble into Hubless Baseplate-Like Structure In Vitro

Petr Leiman

The baseplate of phage T4 is an important model system in viral supramolecular assembly. The baseplate consists of six wedges surrounding the central hub. We report the first successful attempt at complete wedge assembly using an in vitro approach based on ...

Elsevier2010