Publications by Dimitri Bruno Marie Rodarie

Mapping of morpho-electric features to molecular identity of cortical inhibitory neurons

Henry Markram, Srikanth Ramaswamy, Daniel Keller, Michael Reimann, Yann Roussel, Dimitri Bruno Marie Rodarie, Tanguy Pierre Louis Damart

Author summaryThe computational abilities of the brain arise from its organization principles at the cellular level. One of these principles is the neuronal type composition over different regions. Since computational functions of neurons are best describe ...

2023

A method to estimate the cellular composition of the mouse brain from heterogeneous datasets

Henry Markram, Srikanth Ramaswamy, Daniel Keller, Michael Reimann, Marc-Oliver Gewaltig, Yann Roussel, Dimitri Bruno Marie Rodarie

The mouse brain contains a rich diversity of inhibitory neuron types that have been characterized by their patterns of gene expression. However, it is still unclear how these cell types are distributed across the mouse brain. We developed a computational m ...

2022

Data-driven whole mouse brain modeling for multi-scale simulations

Dimitri Bruno Marie Rodarie

In this thesis, we present a data-driven iterative pipeline to generate, simulate and validate point-neuron models of the whole mouse brain. The ultimate goal is to replicate close loop experiments with a virtual body in a virtual world. This pipeline was ...

EPFL2022

A Whole-Body Musculoskeletal Model of the Mouse

Auke Ijspeert, Jonathan Patrick Arreguit O'Neill, Grégoire Courtine, Dimitri Bruno Marie Rodarie, Claudia Kathe

Neural control of movement cannot be fully understood without careful consideration of interactions between the neural and biomechanical components. Recent advancements in mouse molecular genetics allow for the identification and manipulation of constituen ...

IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC2021

Supervised Learning With Perceptual Similarity for Multimodal Gene Expression Registration of a Mouse Brain Atlas

Henry Markram, Felix Schürmann, Csaba Erö, Daniel Keller, Huanxiang Lu, Francesco Casalegno, Dimitri Bruno Marie Rodarie

The acquisition of high quality maps of gene expression in the rodent brain is of fundamental importance to the neuroscience community. The generation of such datasets relies on registering individual gene expression images to a reference volume, a task en ...

FRONTIERS MEDIA SA2021