Publications by Annie Sandrine Guillaume

Harnessing Multiscale Topographic Environmental Variables for Regional Coral Species Distribution Models

Stéphane Joost, Annie Sandrine Guillaume

Effective biodiversity conservation requires knowledge of species' distributions across large areas, yet prevalence data for marine sessile species is scarce, with traditional variables often unavailable at appropriate temporal and spatial resolutions. As ...

WILEY2025

Locally Specific Genome-Wide Signatures of Adaptation to Environmental Variation at High Resolution in an Alpine Plant

Stéphane Joost, Kevin Leempoel, Annie Sandrine Guillaume

Microevolutionary processes shape adaptive responses to heterogeneous environments, where these effects vary both among and within species. However, it remains largely unknown to which degree signatures of adaptation to environmental drivers can be detecte ...

2025

At what spatial scale does natural selection operate? Using multiscale frameworks to calibrate the effects of environmental factors across landscape continuums

Annie Sandrine Guillaume

Patterns in nature arise from processes interacting across a continuum of spatial scales, where new relationships emerge at each level of investigation. These patterns are nested features encompassing fine-scale local patterns, such as topography and geolo ...

EPFL2024

Integrating very high resolution environmental proxies in genotype-environment association studies

Stéphane Joost, Kevin Leempoel, Annie Sandrine Guillaume

Landscape genomic analyses associating genetic variation with environmental variables are powerful tools for studying molecular signatures of species' local adaptation and for detecting candidate genes under selection. The development of landscape genomics ...

Wiley2024

Vertical distribution and seasonal dynamics of planktonic cyanobacteria communities in a water column of deep mesotrophic Lake Geneva

Natacha Tofield-Pasche, Stéphane Joost, Tamar Kohn, Charlotte Gisèle Weil, Oliver Michele Selmoni, Anna Carratala Ripolles, Coralie Chappelier, Hannah Elisa Chmiel, Annie Sandrine Guillaume

Background: Temperate subalpine lakes recovering from eutrophication in central Europe are experiencing harmful blooms due to the proliferation of Planktothrix rubescens, a potentially toxic cyanobacteria. To optimize the management of cyanobacteria blooms ...

Frontiers Media SA2023

Genomics and conservation: Guidance from training to analyses and applications

Annie Sandrine Guillaume

Environmental change is intensifying the biodiversity crisis and threatening species across the tree of life. Conservation genomics can help inform conservation actions and slow biodiversity loss. However, more training, appropriate use of novel genomic me ...

Wiley2023

Multiscale Very High Resolution Topographic Models in Alpine Ecology: Pros and Cons of Airborne LiDAR and Drone-Based Stereo-Photogrammetry Technologies

Stéphane Joost, Aude Rogivue, Estelle Rochat, Kevin Leempoel, Annie Sandrine Guillaume

The vulnerability of alpine environments to climate change presses an urgent need to accurately model and understand these ecosystems. Popularity in the use of digital elevation models (DEMs) to derive proxy environmental variables has increased over the p ...

2021

Sampling strategy optimization to increase statistical power in landscape genomics: a simulation-based approach

Stéphane Joost, Estelle Rochat, Oliver Michele Selmoni, Elia Vajana, Annie Sandrine Guillaume

An increasing number of studies are using landscape genomics to investigate local adaptation in wild and domestic populations. The implementation of this approach requires the sampling phase to consider the complexity of environmental settings and the burd ...

2020