Publications related to HydEE: Failure Containment without Event Logging for Large Scale Send-Deterministic MPI Applications

Planetary-Scale Byzantine Fault Tolerance

The scale and pervasiveness of the Internet make it a pillar of planetary communication, industry and economy, as well as a fundamental medium for public discourse and democratic engagement. In stark contrast with the Internet's decentralized infrastructur ...

EPFL2024

Multiscale biomolecular simulations in the exascale era

Ursula Röthlisberger, Simone Meloni

The complexity of biological systems and processes, spanning molecular to macroscopic scales, necessitates the use of multiscale simulations to get a comprehensive understanding. lar dynamics (MD) simulations are crucial for capturing processes beyond the ...

Current Biology Ltd2024

Highly Parallel RTL Simulation

Verification and testing of hardware heavily relies on cycle-accurate simulation of RTL. As single-processor performance is growing only slowly, conventional, single-threaded RTL simulation is becoming impractical for increasingly complex chip designs and ...

EPFL2024

Interpret3C: Interpretable Student Clustering Through Individualized Feature Selection

Julian Thomas Blackwell, Tanja Christina Käser Jacober, Paola Mejia Domenzain, Vinitra Swamy, Isadora Alves de Salles

Clustering in education, particularly in large-scale online environments like MOOCs, is essential for understanding and adapting to diverse student needs. However, the effectiveness of clustering depends on its interpretability, which becomes challenging w ...

2024

uKharon: A Membership Service for Microsecond Applications

Rachid Guerraoui, Javier Picorel Obando, Athanasios Xygkis, Antoine Murat

Modern data center fabrics open the possibility of microsecond distributed applications, such as data stores and message queues. A challenging aspect of their development is to ensure that, besides being fast in the common case, these applications react fa ...

USENIX Association2023

Unsupervised Graph Representation Learning with Cluster-aware Self-training and Refining

Qiang Liu, Feng Yu, Yichen Xu

Unsupervised graph representation learning aims to learn low-dimensional node embeddings without supervision while preserving graph topological structures and node attributive features. Previous Graph Neural Networks (GNN) require a large number of labeled ...

Assoc Computing Machinery2023

Building Chips Faster: Hardware-Compiler Co-Design for Accelerated RTL Simulation

Sahand Kashani

The demise of Moore's Law and Dennard scaling has resulted in diminishing performance gains for general-purpose processors, and so has prompted a surge in academic and commercial interest for hardware accelerators. Specialized hardware has already redefine ...

EPFL2023

Reliable Microsecond-Scale Distributed Computing

Athanasios Xygkis

The landscape of computing is changing, thanks to the advent of modern networking equipment that allows machines to exchange information in as little as one microsecond. Such advancement has enabled microsecond-scale distributed computing, where entire dis ...

EPFL2023

A new step forward in realistic cluster lens mass modelling: analysis of Hubble Frontier Field Cluster Abell S1063 from joint lensing, X-ray, and galaxy kinematics data

Johan Richard, Jean-Paul Richard Kneib, Mathilde Jauzac, Benjamin Yvan Alexandre Clement, Benjamin Emmanuel Nicolas Beauchesne

We present a new method to simultaneously and self-consistently model the mass distribution of galaxy clusters that combines constraints from strong lensing features, X-ray emission, and galaxy kinematics measurements. We are able to successfully decompose ...

Oxford Univ Press2023

Leaderless consensus

Rachid Guerraoui, Vincent Gramoli, Mihail Igor Zablotchi, Karolos Antoniadis, Antoine Philippe Matthieu Desjardins, Gauthier Jérôme Timothée Voron

Classic synchronous consensus algorithms are leaderless in that processes exchange proposals, choose the maximum value and decide when they see the same choice across a couple of rounds. Indulgent consensus algorithms are typically leader-based. Although t ...

ACADEMIC PRESS INC ELSEVIER SCIENCE2023

Imprecise Store Exceptions

Babak Falsafi, Siddharth Gupta, Mathias Josef Payer, Yunho Oh, Yuanlong Li, Qingxuan Kang, Abhishek Bhattacharjee

Precise exceptions are a cornerstone of modern computing as they provide the abstraction of sequential instruction execution to programmers while accommodating microarchitectural optimizations. However, increasing compute capabilities in deep memory hierar ...

ACM2023

Decentralized in-order execution of a sequential task-based code for shared-memory architectures

Charly Nicolas Lucien Castes

The hardware complexity of modern machines makes the design of adequate programming models crucial for jointly ensuring performance, portability, and productivity in high-performance computing (HPC). Sequential task-based programming models paired with adv ...

IEEE COMPUTER SOC2022

System Support for Robust Distributed Learning

Arsany Hany Abdelmessih Guirguis

Machine learning (ML) applications are ubiquitous. They run in different environments such as datacenters, the cloud, and even on edge devices. Despite where they run, distributing ML training seems the only way to attain scalable, high-quality learning. B ...

EPFL2022

ACACIA: a new method to produce on-the-fly merger trees in the RAMSES code

Mladen Ivkovic

The implementation of ACACIA, a new algorithm to generate dark matter halo merger trees with the Adaptive Mesh Refinement code RAMSES, is presented. The algorithm is fully parallel and based on the Message Passing Interface. As opposed to most available me ...

OXFORD UNIV PRESS2022

STEPS 4.0: Fast and memory-efficient molecular simulations of neurons at the nanoscale

Felix Schürmann, James Gonzalo King, Christos Kotsalos, Pramod Shivaji Kumbhar, Iain Hepburn, Weiliang Chen, Tristan Mathieu Carel, Samuel Marie A Melchior, Omar Awile, Baudouin Paul Michel Maria Joseph Del Marmol, Alessandro Cattabiani, Giacomo Castiglioni, Nicola Cantarutti

Recent advances in computational neuroscience have demonstrated the usefulness and importance of stochastic, spatial reaction-diffusion simulations. However, ever increasing model complexity renders traditional serial solvers, as well as naive parallel imp ...

FRONTIERS MEDIA SA2022

Efficient Analytical Query Processing on CPU-GPU Hardware Platforms

Periklis Chrysogelos

Timely insights lead to business growth and scientific breakthroughs but require analytical engines that cope with the ever-increasing data processing needs. Analytical engines relied on rapid CPU improvements, yet the end of Dennard scaling stopped the fr ...

EPFL2022

Subspace clustering in high-dimensions: Phase transitions & Statistical-to-Computational gap

Florent Gérard Krzakala, Lenka Zdeborová, Bruno Loureiro, Luca Pesce, Bruno Loureiro

A simple model to study subspace clustering is the high-dimensional k -Gaussian mixture model where the cluster means are sparse vectors. Here we provide an exact asymptotic characterization of the statistically optimal reconstruction error in this model i ...

2022

Covariance matrices for variance-suppressed simulations

Cheng Zhao

Cosmological N-body simulations provide numerical predictions of the structure of the Universe against which to compare data from ongoing and future surveys, but the growing volume of the Universe mapped by surveys requires correspondingly lower statistica ...

OXFORD UNIV PRESS2022

Systematic analysis of low-affinity transcription factor binding site clusters in vitro and in vivo establishes their functional relevance

Sebastian Maerkl, Ivan Istomin, Evan James Olson, Shiyu Cheng, Amir Shahein, Maria Lopez Malo

Binding to binding site clusters has yet to be characterized in depth, and the functional relevance of low-affinity clusters remains uncertain. We characterized transcription factor binding to low-affinity clusters in vitro and found that transcription fac ...

Nature Portfolio2022

Gem5-X : A Many-Core Heterogeneous Simulation Platform for Architectural Exploration and Optimization

David Atienza Alonso, William Andrew Simon, Marina Zapater Sancho, Yasir Mahmood Qureshi

The increasing adoption of smart systems in our daily life has led to the development of new applications with varying performance and energy constraints, and suitable computing architectures need to be developed for these new applications. In this paper, ...

2021