Genome-wide chromatin conformation capture assays provide formidable insights into the spatial organization of genomes. However, due to the complexity of the data structure, their integration in multi-omics workflows remains challenging. We present data st ...

Nature Research2024

Probing Catalytic Sites and Adsorbate Spillover on Ultrathin FeO2-x Film on Ir(111) during CO Oxidation

Harald Brune, Hao Yin, Wei Fang

The spatially resolved identification of active sites on the heterogeneous catalyst surface is an essential step toward directly visualizing a catalytic reaction with atomic scale. To date, ferrous centers on platinum group metals have shown promising pote ...

Amer Chemical Soc2024

From Automated Bootstrapping to Collaborative Editing: A Framework for 4D City Reconstruction

Didier Louis Dupertuis, Rémi Guillaume Petitpierre, Paul Robert Guhennec, Beatrice Vaienti

We propose a framework for the construction of 4D scientific models for cities of the past. It leverages both the use of computational methods for bootstrapping, and a collaborative interface for visualisation and edition. This permits to continuously enri ...

Zenodo2023

The JPEG AI Standard: Providing Efficient Human and Machine Visual Data Consumption

Touradj Ebrahimi

The Joint Photographic Experts Group (JPEG) AI learning-based image coding system is an ongoing joint standardization effort between International Organization for Standardization (ISO), International Electrotechnical Commission (IEC), and International Te ...

IEEE COMPUTER SOC2023

ROSMOSE: A Web-based Optimization Tool to Aid Decision-making for the Design and Operation of Industrial and Urban Energy Systems

François Maréchal, Cédric Terrier, Daniel Alexander Florez Orrego, Michel Lopez, Meire Ellen Gorete Ribeiro Domingos

Energy efficiency is crucial for the sustainable operation of all industrial and urban sectors. However, practicing engineers have seldom access to open-source tools that can readily evaluate and compare scenarios in terms of energy consumption, cost, and ...

2023

Meshing of Spiny Neuronal Morphologies using Union Operators

Felix Schürmann, Marwan Muhammad Ahmed Abdellah, Juan José García Cantero, Alessandro Enrico Foni, Nadir Roman Guerrero, Elvis Boci

Neurons are characterized by thin and long interleaving arborizations in which creating accurate mesh models of their cellular membranes is challenging. While union operators are central for CAD/CAM modeling and computer graphics applications, their applic ...

2022

Quantifying uncertain system outputs via the multi-level Monte Carlo method --- distribution and robustness measures

Fabio Nobile, Sebastian Krumscheid, Sundar Subramaniam Ganesh

In this work, we consider the problem of estimating the probability distribution, the quantile or the conditional expectation above the quantile, the so called conditional-value-at-risk, of output quantities of complex random differential models by the MLM ...

2023

True scale-free networks hidden by finite size effects

Andrea Rinaldo, Samir Suweis, Amos Maritan

We analyze about 200 naturally occurring networks with distinct dynamical origins to formally test whether the commonly assumed hypothesis of an underlying scale-free structure is generally viable. This has recently been questioned on the basis of statisti ...

National Academy of Sciences2021

Recent advances in trajectory inference from single-cell omics data

Bart Deplancke, Wouter Saelens

Trajectory inference methods have emerged as a novel class of single-cell bioinformatics tools to study cellular dynamics at unprecedented resolution. Initial development focused on adapting methods based on clustering or graph traversal, but recent advanc ...

ELSEVIER2021

Explosive fragmentation of Prince Rupert's drops leads to well-defined fragment sizes

Jean-François Molinari

Anyone who has ever broken a dish or a glass knows that the resulting fragments range from roughly the size of the object all the way down to indiscernibly small pieces: typical fragment size distributions of broken brittle materials follow a power law, an ...

Nature Research2021

Computational tool for stock-constrained design of structures

Corentin Jean Dominique Fivet, Jan Friedrich Georg Brütting, Jonas Warmuth

Designing structures from reused elements is becoming an increasingly important design task for structural engineers as it has potential to significantly reduce adverse environmental impacts of building structures. To allow for a broad application of this ...

2021

Rapid screening of nanopore candidates in nanoporous single-layer graphene for selective separations using molecular visualization and interatomic potentials

Rohit Karnik, Luc Sébastien Bondaz

Nanoporous single-layer graphene is promising as an ideal membrane because of its extreme thinness, chemical resistance, and mechanical strength, provided that selective nanopores are successfully incorporated. However, screening and understanding the tran ...

AIP Publishing2021

Development of the RAPTOR suite of codes towards real-time reconstruction of JET discharges

Federico Alberto Alfredo Felici

The RAPTOR suite of codes combines real-time model-based predictions of the plasma state with the available diagnostic measurements. Following the work on TCV and ASDEX-Upgrade, this paper presents the implementation of the RAPTOR suite for JET. This suite ...

2021

Dynamics and clogging of colloidal monolayers magnetically driven through a heterogeneous landscape

Ignacio Pagonabarraga Mora

We combine experiments and numerical simulations to investigate the emergence of clogging in a system of interacting paramagnetic colloidal particles driven against a disordered landscape of larger obstacles. We consider a single aperture in a landscape of ...

ROYAL SOC CHEMISTRY2020

The SONATA data format for efficient description of large-scale network models

James Gonzalo King, Juan Bautista Hernando Vieites, Eilif Benjamin Muller, Jean-Denis Georges Emile Courcol, Werner Alfons Hilda Van Geit, Michael Emiel Gevaert, Judit Planas Carbonell, Adrien Michel Achille Devresse

Increasing availability of comprehensive experimental datasets and of high-performance computing resources are driving rapid growth in scale, complexity, and biological realism of computational models in neuroscience. To support construction and simulation ...

2020

Radial Scope: A New Visualization Tool for Structure-Data Relationships

Communication of data associated with chemical structures in a concise fashion can be challenging. Here, we describe an alternative to the classic substrate table that integrates numerical data with struttural changes. These radial-scopeplots facilitate th ...

2020

Visual Attention and Perceptual Quality in Omnidirectional Imaging

Evgeniy Upenik

Omnidirectional imaging has reached a level of widespread availability driven by recent advances in integrated circuit technology, image sensors, and computer graphics which allow now capturing, rendering and displaying of such type of immersive content in ...

EPFL2020

Sub-Matrix Factorization for Real-Time Vote Prediction

Patrick Thiran, Matthias Grossglauser, Victor Kristof

We address the problem of predicting aggregate vote outcomes (e.g., national) from partial outcomes (e.g., regional) that are revealed sequentially. We combine matrix factorization techniques and generalized linear models (GLMs) to obtain a flexible, effic ...

2020

Improved susceptibility-weighted imaging for high contrast and resolution thalamic nuclei mapping at 7T

Meritxell Bach Cuadra, Elena Najdenovska, José Pedro Rebelo Ferreira Marques, Frédéric Gretsch, João Pedro Forjaco Jorge, Daniel Gallichan, Constantin Tuleasca

Purpose The thalamus is an important brain structure and neurosurgical target, but its constituting nuclei are challenging to image non-invasively. Recently, susceptibility-weighted imaging (SWI) at ultra-high field has shown promising capabilities for tha ...

Wiley2020

Page 1 sur 2