Publications associées à Demographic history

1805-1898 Census Records of Lausanne : a Long Digital Dataset for Demographic History

Isabella Di Lenardo, Lucas Arnaud André Rappo, Rémi Guillaume Petitpierre, Marion Kramer

This historical dataset stems from the project of automatic extraction of 72 census records of Lausanne, Switzerland. The complete dataset covers a century of historical demography in Lausanne (1805-1898), which corresponds to 18,831 pages, and nearly 6 mi ...

Zenodo2023

Academic boredom(s): a person-centered investigation

Alexandra Corina Niculescu

Should we refer to boredom or boredoms? Research on the emotion of boredom sets itself apart from studies on other emotions by posing the question: is boredom a singular concept or does it have multiple facets? In this manuscript presenting empirical resea ...

2023

An end-to-end pipeline for historical censuses processing

Lucas Arnaud André Rappo, Rémi Guillaume Petitpierre, Marion Kramer

Censuses are structured documents of great value for social and demographic history, which became widespread from the nineteenth century on. However, the plurality of formats and the natural variability of historical data make their extraction arduous and ...

2023

Lausanne Historical Censuses Dataset HTR 35k

Lucas Arnaud André Rappo, Rémi Guillaume Petitpierre, Marion Kramer

This training dataset includes a total of 34,913 manually transcribed text segments. It is dedicated to the handwritten text recognition (HTR) of historical sources, typically tabular records, such as censuses. This dataset is based on a sample of 83 pages ...

Zenodo2023

Geographic clusters of objectively measured physical activity and the characteristics of their built environment in a Swiss urban area

Stéphane Joost, Marco André Vieira Ruas, Idris Guessous, Cédric Gubelmann

Introduction ...

PUBLIC LIBRARY SCIENCE2022

Stabilization of cultural innovations depends on population density: Testing an epidemiological model of cultural evolution against a global dataset of rock art sites and climate-based estimates of ancient population densities

John Richard Walker, Taylor Howard Newton, Francesco Casalegno

Demographic models of human cultural evolution have high explanatory potential but weak empirical support. Here we use a global dataset of rock art sites and climate and genetics-based estimates of ancient population densities to test a new model based on ...

2021

International Migration And The Growth Of Zurich, 1836-1949

Mathias Lerch

The role played by international migration and its interactions with other demographic components in the process of city growth remains underappreciated. We analyze trends in natural increase and in net internal and international migration in Zurich during ...

2021

The population genetics of crypsis in vertebrates: recent insights from mice, hares, and lizards

Jeffrey David Jensen, Kristen Kay Irwin, Susanne Petra Pfeifer, Stefan Jean Laurent

By combining well-established population genetic theory with high-throughput sequencing data from natural populations, major strides have recently been made in understanding how, why, and when vertebrate populations evolve crypsis. Here, we focus on backgr ...

NATURE PUBLISHING GROUP2020

Fitting Markovian binary trees using global and individual demographic data

Sophie Myriam Hautphenne, Katharine Felicity Turner

We consider a class of continuous-time branching processes called Markovian binary trees (MBTs), in which the individuals lifetime and reproduction epochs are modelled using a transient Markovian arrival process (TMAP). We develop methods for estimating th ...

ACADEMIC PRESS INC ELSEVIER SCIENCE2019

The Demographic History of African Drosophila melanogaster

Jeffrey David Jensen, Adamantia Kapopoulou, Susanne Petra Pfeifer, Stefan Jean Laurent

As one of the most commonly utilized organisms in the study of local adaptation, an accurate characterization of the demographic history of Drosophila melanogaster remains as an important research question. This owes both to the inherent interest in charac ...

OXFORD UNIV PRESS2018

Spatial distribution of mammography adherence in a Swiss urban population and its association with socioeconomic status

Stéphane Joost, Idris Guessous, Rebecca Himsl

Purpose: Local physical and social environment has a defining influence on individual behaviour and health-related outcomes. However, it remains undetermined if its impact is independent of individual socioeconomic status. In this study, we evaluated the s ...

2018

Spatial distribution of mammography adherence in a Swiss urban population and its association with socioeconomic status

Stéphane Joost, Idris Guessous, Rebecca Himsl

Purpose: Local physical and social environment has a defining influence on individual behaviour and health-related outcomes. However, it remains undetermined if its impact is independent of individual socioeconomic status. In this study, we evaluated the s ...

2018

Computational and Statistical analyses of Molecular Evolution and Demography using Large-scale Sequencing Data

Adamantia Kapopoulou

Evolution can be described as the change of allele frequencies over time. Four forces - mutation, migration, genetic drift, and selection, drive this change. The aim of my thesis was to accurately estimate and differentiate the parameters governing each of ...

EPFL2018

The Demographic and Adaptive History of the African Green Monkey

Susanne Petra Pfeifer

Relatively little is known about the evolutionary history of the African green monkey (genus Chlorocebus) due to the lack of sampled polymorphism data fromwild populations. Yet, this characterization of genetic diversity is not only critical for a better u ...

Oxford Univ Press2017

High performance computation of landscape genomic models including local indicators of spatial association

Stéphane Joost, Sylvie Stucki, Pierre Taberlet, Solange Catherine Gaillard

With the increasing availability of both molecular and topo-climatic data, the main challenges facing landscape genomics — i.e. the combination of landscape ecology with population genomics — include processing large numbers of models and distinguishing be ...

Wiley-Blackwell2017

Hydrology and density feedbacks control the ecology of intermediate hosts of schistosomiasis across habitats in seasonal climates

Andrea Rinaldo, Enrico Bertuzzo, Lorenzo Mari, Natalie Claire Ceperley, Theophile Mande, Francisco Javier Perez Saez, Marino Gatto

We report about field and theoretical studies on the ecology of the aquatic snails (Bulinus spp. and Biomphalaria pfeifferi) that serve as obligate intermediate hosts in the complex life cycle of the parasites causing human schistosomiasis. Snail abundance ...

Natl Acad Sciences2016

Antiviral drug resistance as an adaptive process

Kristen Kay Irwin, Jeffrey David Jensen

Antiviral drug resistance is a matter of great clinical importance that, historically, has been investigated mostly from a virological perspective. Although the proximate mechanisms of resistance can be readily uncovered using these methods, larger evoluti ...

Oxford University Press2016

Worldwide Population Structure, Long-Term Demography, and Local Adaptation of Helicobacter pylori

Jeffrey David Jensen, Matthieu Foll, Valeria Montano

Helicobacter pylori is an important human pathogen associated with serious gastric diseases. Owing to its medical importance and close relationship with its human host, understanding genomic patterns of global and local adaptation in H. pylori may be of pa ...

Genetics Society America2015

On Detecting Incomplete Soft or Hard Selective Sweeps Using Haplotype Structure

Anna Ferrer Admetlla

We present a new haplotype-based statistic (nS(L)) for detecting both soft and hard sweeps in population genomic data from a single population. We compare our new method with classic single-population haplotype and site frequency spectrum (SFS)-based metho ...

Oxford Univ Press2014

Robust Demographic Inference from Genomic and SNP Data

Matthieu Foll

We introduce a flexible and robust simulation-based framework to infer demographic parameters from the site frequency spectrum (SFS) computed on large genomic datasets. We show that our composite-likelihood approach allows one to study evolutionary models ...

Public Library of Science2013