Publications associées à Tri par base

Design and construction of a microfluidics workstation for high-throughput multi-wavelength fluorescence and transmittance activated droplet analysis and sorting

Christoph Merten, Jatin Panwar, Alexis Louis Autour

Droplet microfluidics has revolutionized quantitative high-throughput bioassays and screening, especially in the field of single-cell analysis where applications include cell characterization, antibody discovery and directed evolution. However, droplet mic ...

NATURE PORTFOLIO2023

Worldwide analysis of reef surveys sorts coral taxa by associations with recent and past heat stress

Stéphane Joost, Oliver Michele Selmoni, Véronique Berteaux-Lecellier

Coral reefs around the world are under threat from anomalous heat waves that are causing the widespread decline of hard corals. Different coral taxa are known to have different sensitivities to heat, although variation in susceptibilities have also been ob ...

FRONTIERS MEDIA SA2022

Towards a secure and trustworthy imaging with non-fungible tokens

Touradj Ebrahimi, Evgeniy Upenik, Davi Nachtigall Lazzarotto

Non fungible tokens (NFTs) are used to define the ownership of digital assets. More recently, there has been a surge of platforms to auction digital art as well as other digital assets in form of image, video, and audio content of all sorts. Although NFTs ...

2021

How Many CPU Cores is an FPGA Worth? Lessons Learned from Accelerating String Sorting on a CPU-FPGA System

Paolo Ienne, Mikhail Asiatici, Damian Maiorano

String sorting is a fundamental kernel of string matching and database index construction; yet, it has not been studied as extensively as fixed-length keys sorting. Because processing variable-length keys in hardware is challenging, it is no surprise that ...

SPRINGER2021

Computational methods for live heart imaging with speed-constrained microscopes

Olivia Mariani

Imaging methods to capture the beating and developing heart inside embryonic animal models such as the zebrafish are a key component for the study of fundamental biological processes such as cardiac birth defects or tissue regeneration. However, live heart ...

EPFL2021

From Trees to Barcodes and Back Again: Theoretical and Statistical Perspectives

Kathryn Hess Bellwald, Lida Kanari, Adélie Eliane Garin

Methods of topological data analysis have been successfully applied in a wide range of fields to provide useful summaries of the structure of complex data sets in terms of topological descriptors, such as persistence diagrams. While there are many powerful ...

2020

Three-dimensional electrodes for dielectrophoretic applications

Kevin Keim

This thesis reports the use of metal-coated three-dimensional SU-8 electrodes for dielectrophoretic bio sensing and particle manipulation applications. Placing free standing three-dimensional electrodes in microfluidic channels, electric fields can be appl ...

EPFL2020

FPGAs in the Datacenters: the Case of Parallel Hybrid Super Scalar String Sample Sort

Paolo Ienne, Mikhail Asiatici, Damian Maiorano

String sorting is an important part of database and MapReduce applications; however, it has not been studied as extensively as sorting of fixed-length keys. Handling variable-length keys in hardware is challenging and it is no surprise that no string sorte ...

IEEE COMPUTER SOC2020

Device and method for sorting biological entities

Francesco Mondada, Frank Bonnet, Norbert Crot, Marcin Antoni Sylwestrzak

A device for sorting biological entities is disclosed. The device comprises a channel to canalize the biological entities and a selector having slots to accommodate said entities. Means for detecting and analysing an optical parameter of the biological ent ...

2019

Efficient Learning from Comparisons

Lucas Maystre

Humans are comparison machines: comparing and choosing an item among a set of alternatives (such as objects or concepts) is arguably one of the most natural ways for us to express our preferences and opinions. In many applications, the analysis of data con ...

EPFL2018

Novel compartment-specific biosensors reveal a complementary subcellular distribution of bioactive Furin and PC7

Pierpaolo Ginefra

Proprotein Convertases (PCs) constitute a family of serine proteases that activate various hormones, growth factors and cell adhesion molecules by mediating endoproteolytic cleavage of their secreted inactive precursors during their transit in the secret ...

EPFL2018

Automated microfluidic sorting of mammalian cells labeled with magnetic microparticles for those that efficiently express and secrete a protein of interest

Amar Rida, Nicolas Mermod, Etienne Lançon, Niamh Harraghy

We developed a method for the fast sorting and selection of mammalian cells expressing and secreting a protein at high levels. This procedure relies on cell capture using an automated microfluidic device handling antibody-coupled magnetic microparticles an ...

Wiley2017

FloDB: Unlocking Memory in Persistent Key-Value Stores

Rachid Guerraoui, Mihail Igor Zablotchi, Vasileios Trigonakis, Oana Maria Balmau

Log-structured merge (LSM) data stores enable to store and process large volumes of data while maintaining good performance. They mitigate the I/O bottleneck by absorbing updates in a memory layer and transferring them to the disk layer in sequential batch ...

2017

Size-dependent sorting of C. elegans nematodes through an adjustable microfluidic filter structure

Martinus Gijs, Thomas Lehnert, Matteo Cornaglia, Li Dong

We introduce a new and simple microfluidic sorting device based on adjustable filter structures that can be easily tuned by external pressure for a specific size-dependent C. elegans worm sorting experiment. A single device can be used for selecting and so ...

2016

A bucket sort algorithm for the particle-in-cell method on manycore architectures

Laurent Villard, Stephan Brunner, Trach-Minh Tran, Claudio Gheller

The Particle-In-Cell (PIC) method is effectively used in many scientific simulation codes. In order to optimize the performance of the PIC approach, data locality is required. This relies on efficient sorting algorithms. We present a bucket sort algorithm ...

Springer2016

Versatile size-dependent sorting of C-elegans nematodes and embryos using a tunable microfluidic filter structure

Martinus Gijs, Thomas Lehnert, Matteo Cornaglia, Li Dong

The roundworm Caenorhabditis elegans (C. elegans) is a powerful model organism for addressing fundamental biological questions related to human disease and aging. Its life cycle consists of an embryo stage, four larval stages that can be clearly distinguis ...

Royal Soc Chemistry2016

Haplosufficiency of PAX3 for melanoma development in Tyr: NRASQ61K; Cdkn2a-/- mice allows identification and sorting of melanoma cells using a Pax3GFP reporter allele

Friedrich Beermann

The role of the Pax3 gene in embryonic development of pigment cells is well characterized. By contrast, the function of Pax3 in melanoma development is controversial. Indeed, data obtained from cultured cells suggest that PAX3 may contribute to melanomagen ...

Lippincott Williams & Wilkins2016

Calibration method and system

Martin Vetterli, Ivan Dokmanic

The present invention concerns a method for calibrating an array of receivers (ri), each receiver being configured for receiving a signal transmitted by at least one transmitter (si), and echoes of the transmitted signal as reflected by one or more reflect ...

2014

A microfluidic device to sort capsules by deformability: A numerical study

Lailai Zhu, Cecilia Rorai

Guided by extensive numerical simulations, we propose a microfluidic device that can sort elastic capsules by their deformability. The device consists of a duct embedded with a semi-cylindrical obstacle, and a diffuser which further enhances the sorting ca ...

Royal Society of Chemistry2014

Tight Bounds for Asynchronous Renaming

Rachid Guerraoui, Seth Gilbert, Dan Alistarh

This article presents the first tight bounds on the time complexity of shared-memory renaming, a fundamental problem in distributed computing in which a set of processes need to pick distinct identifiers from a small namespace. We first prove an individual ...

Association for Computing Machinery2014