Publications de Alexandros Stamatakis

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

Alexandros Stamatakis, Jeffrey David Jensen

In the age of whole-genome population genetics, so-called genomic scan studies often conclude with a long list of putatively selected loci. These lists are then further scrutinized to annotate these regions by gene function, corresponding biological proces ...

Oxford University Press2012

Uncovering hidden phylogenetic consensus in large datasets

Bernard Moret, Alexandros Stamatakis, Krister Swenson

Institute of Electrical and Electronics Engineers2011

How many bootstrap replicates are necessary?

Bernard Moret, Alexandros Stamatakis

Phylogenetic bootstrapping (BS) is a standard technique for inferring confidence values on phylogenetic trees that is based on reconstructing many trees from minor variations of the input data, trees called replicates. BS is used with all phylogenetic reco ...

2010

Parallel computation of phylogenetic consensus trees

Alexandros Stamatakis

Elsevier2010

How many bootstrap replicates are necessary?

Bernard Moret, Alexandros Stamatakis

Springer2009

A Rapid Bootstrap Algorithm for the RAxML Web Servers

Alexandros Stamatakis, Jacques Rougemont

Despite recent advances achieved by application of high-performance computing methods and novel algorithmic techniques to maximum likelihood (ML)-based inference programs, the major computational bottleneck still consists in the computation of bootstrap su ...

Taylor and Francis, Oxford2008

A nuclear ribosomal DNA phylogeny of Acer inferred with maximum likelihood, splits graphs, and motif analysis of 606 sequences

Alexandros Stamatakis

2006

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis

2006

Alexandros Stamatakis

Graph Chatbot

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

Uncovering hidden phylogenetic consensus in large datasets

How many bootstrap replicates are necessary?

Parallel computation of phylogenetic consensus trees

How many bootstrap replicates are necessary?

A Rapid Bootstrap Algorithm for the RAxML Web Servers

Dynamic multigrain parallelization on the Cell broadband engine

Runtime scheduling of dynamic parallelism on accelerator-based multicore systems

Multiple evolutionary mechanisms drive papillomavirus diversification

Exploring new search algorithms and hardware for phylogenetics: RAxML meets the IBM Cell

AxPcoords and parallel AxParafit: Statistical co-phylogenetic analyses on thousands of taxa

Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L

A nuclear ribosomal DNA phylogeny of Acer inferred with maximum likelihood, splits graphs, and motif analysis of 606 sequences

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models