Publications de Ferréol Arnaud Marie Soulez

Diffraction Tomography from Single-Molecule Localization Microscopy: Numerical Feasibility

Michaël Unser, Thanh-An Michel Pham, Ferréol Arnaud Marie Soulez, Emmanuel Emilien Louis Soubies

Single-molecule localization microscopy (SMLM) is a fluorescence microscopy technique that achieves super-resolution imaging by sequentially activating and localizing random sparse subsets of fluorophores. Each activated fluorophore emits light that then s ...

IEEE2021

Optical diffraction tomography from single-molecule localization microscopy

Michaël Unser, Thanh-An Michel Pham, Ferréol Arnaud Marie Soulez, Emmanuel Emilien Louis Soubies

Single-molecule localization microscopy (SMLM) is a powerful method for the imaging of cellular structures. This modality delivers nanoscale resolution by sequentially activating a subset of fluorescent molecules and by extracting their super-resolved posi ...

2021

Pocket guide to solve inverse problems with GlobalBioIm

Michaël Unser, Daniel Sage, Laurène Donati, Thanh-An Michel Pham, Ferréol Arnaud Marie Soulez, Michael Thompson McCann, Emmanuel Emilien Louis Soubies, Thomas Jean Debarre

GlobalBioIm is an open-source MATLAB (R) library for solving inverse problems. The library capitalizes on the strong commonalities between forward models to standardize the resolution of a wide range of imaging inverse problems. Endowed with an operator-al ...

2019

Compact in-line lensfree digital holographic microscope

Michaël Unser, Christophe Moser, Manon Rostykus, Ferréol Arnaud Marie Soulez

2018

Versatile reconstruction framework for diffraction tomography with intensity measurements and multiple scattering

Michaël Unser, Demetri Psaltis, Thanh-An Michel Pham, Ferréol Arnaud Marie Soulez, Joowon Lim, Emmanuel Emilien Louis Soubies

2018

Phaseless Diffraction Tomography With Regularized Beam Propagation

Michaël Unser, Alexandre Goy, Demetri Psaltis, Thanh-An Michel Pham, Ferréol Arnaud Marie Soulez, Joowon Lim, Emmanuel Emilien Louis Soubies

In recent years, researchers have obtained impressive reconstructions of the refractive index (RI) of biological objects through the combined use of advanced physics (nonlinear forward model) and regularization. Here, we propose an adaptation of these tech ...

IEEE2018

Structure of Herbig AeBe Disks at the milliarcsecond Scale—A Statistical Survey in the H Band Using PIONIER-VLTI

Ferréol Arnaud Marie Soulez

Context. It is now generally accepted that the near-infrared excess of Herbig AeBe stars originates in the dust of a circumstellar disk. Aims. The aims of this article are to infer the radial and vertical structure of these disks at scales of order 1 au, a ...

ESO2017

GlobalBioIm: A Unifying Computational Framework for Solving Inverse Problems

Michaël Unser, Laurène Donati, Ferréol Arnaud Marie Soulez, Michael Thompson McCann, Emmanuel Emilien Louis Soubies

We present a unifying framework for the development of state-of-the-art reconstruction algorithms in computational optics with a clear separation between the physical (forward model) and signal-related (regularization, incorporation of prior constraints) a ...

OSA2017

DeconvolutionLab2: An Open-Source Software for Deconvolution Microscopy

Michaël Unser, Daniel Sage, Guillaume Schmit, Cédric René Jean Vonesch, Laurène Donati, Denis Fortun, Ferréol Arnaud Marie Soulez

Images in fluorescence microscopy are inherently blurred due to the limit of diffraction of light. The purpose of deconvolution microscopy is to compensate numerically for this degradation. Deconvolution is widely used to restore fine details of 3D biologi ...

2017

Compact Lensless Phase Imager

Michaël Unser, Ferréol Arnaud Marie Soulez

Lensless quantitative phase imaging is of high interest for obtaining a large field of view (FOV), typically the size of the camera chip, to observe biological cell material with high contrast. It has the potential to be widely spread due to its inherent s ...

2017

Global Optimization for Image Restoration in Optical/IR Interferometry

Ferréol Arnaud Marie Soulez

Many image reconstruction algorithms have been proposed to cope with optical/IR interferometric data. A first difficulty is to deal with the sparsity of the data and the uneven u-v coverage. This is usually overcome by imposing a priori constraints to the ...

SPIE2016

Proximity Operators for Phase Retrieval

Michaël Unser, Frédéric Courbin, Ferréol Arnaud Marie Soulez

We present a new formulation of a family of proximity operators that generalize the projector step for phase retrieval. These proximity operators for noisy intensity measurements can replace the classical "noise-free" projection in any projection-based alg ...

OSA2016

A Disk Asymmetry in Motion Around the B[e] Star MWC158

Ferréol Arnaud Marie Soulez

Context. MWC158 is a star with the B[e] phenomenon that shows strong spectrophotometric variability (in lines and in UV and visible continuum) attributed to phases of shell ejection. The evolutionary stage of this star was never clearly determined. Previou ...

EDP Sciences2016

Effective a posteriori Co-Phasing of Interferometric Fringe Data

Ferréol Arnaud Marie Soulez

We have recently shown that a posteriori co-phasing of multi-spectral interferograms was possible.(1) In this contribution, we extend our approach so that it can be applied to actual data as provided by AMBER(2) or MATISSE instruments. The main advantage o ...

SPIE2016

Back-Propagating the Light of Field Stars to Probe Telescope Mirrors Aberrations

Michaël Unser, Frédéric Courbin, Ferréol Arnaud Marie Soulez

We propose a wavefront-based method to estimate the PSF over the whole field of view. This method estimate the aberrations of all the mirrors of the telescope using only field stars. In this proof of concept paper, we described the method and present some ...

SPIE2016

Interbands Phase Models for Polychromatic Image Reconstruction in Optical Interferometry

Alessio Ferrari, Ferréol Arnaud Marie Soulez

This paper presents an extension of the spatio-spectral ("3D") image reconstruction algorithm called PAINTER (Polychromatic opticAl INTErferometric Reconstruction software). The algorithm is able to solve large scale problems and relies on an iterative pro ...

SPIE2016

Direct Temperature Map Estimation in Optical Long Baseline Interferometry

Alessio Ferrari, Ferréol Arnaud Marie Soulez

We present a method to recontruct temperature map directly from spectro-interferometric data. It uses a sparse coding method to describe each pixel as a blackbody. Results are shown on the Herbig Be HD98922. Aside from recovering the mean environment tempe ...

SPIE2016

Spatially Variant PSF Modeling and Image Deblurring

Ferréol Arnaud Marie Soulez

Most current imaging instruments have a spatially variant point spread function (PSF). An optimal exploitation of these instruments requires to account for this non-stationarity. We review existing models of spatially variant PSF with an emphasis on those ...

SPIE2016

Superresolution with Optically-Motivated Blind Deconvolution

Michaël Unser, Ferréol Arnaud Marie Soulez

We show in this paper that an optically motivated parameterization of the PSF prevents classical degeneracies of the blind deconvolution in widefield fluorescence microscopy and provides a resolution close to SIM. ...

OSA2016