Publications associées à A bucket sort algorithm for the particle-in-cell method on manycore architectures

Design and construction of a microfluidics workstation for high-throughput multi-wavelength fluorescence and transmittance activated droplet analysis and sorting

Christoph Merten, Jatin Panwar, Alexis Louis Autour

Droplet microfluidics has revolutionized quantitative high-throughput bioassays and screening, especially in the field of single-cell analysis where applications include cell characterization, antibody discovery and directed evolution. However, droplet mic ...

NATURE PORTFOLIO2023

Assessing real-world gait with digital technology? Validation, insights and recommendations from the Mobilise-D consortium

Kamiar Aminian, Anisoara Ionescu, Abolfazl Soltani, Francesca Salis

Background: Although digital mobility outcomes (DMOs) can be readily calculated from real-world data collected with wearable devices and ad-hoc algorithms, technical validation is still required. The aim of this paper is to comparatively assess and validat ...

BioMed Central2023

Worldwide analysis of reef surveys sorts coral taxa by associations with recent and past heat stress

Stéphane Joost, Oliver Michele Selmoni, Véronique Berteaux-Lecellier

Coral reefs around the world are under threat from anomalous heat waves that are causing the widespread decline of hard corals. Different coral taxa are known to have different sensitivities to heat, although variation in susceptibilities have also been ob ...

FRONTIERS MEDIA SA2022

Computational methods for live heart imaging with speed-constrained microscopes

Olivia Mariani

Imaging methods to capture the beating and developing heart inside embryonic animal models such as the zebrafish are a key component for the study of fundamental biological processes such as cardiac birth defects or tissue regeneration. However, live heart ...

EPFL2021

Towards a secure and trustworthy imaging with non-fungible tokens

Touradj Ebrahimi, Evgeniy Upenik, Davi Nachtigall Lazzarotto

Non fungible tokens (NFTs) are used to define the ownership of digital assets. More recently, there has been a surge of platforms to auction digital art as well as other digital assets in form of image, video, and audio content of all sorts. Although NFTs ...

2021

How Many CPU Cores is an FPGA Worth? Lessons Learned from Accelerating String Sorting on a CPU-FPGA System

Paolo Ienne, Mikhail Asiatici, Damian Maiorano

String sorting is a fundamental kernel of string matching and database index construction; yet, it has not been studied as extensively as fixed-length keys sorting. Because processing variable-length keys in hardware is challenging, it is no surprise that ...

SPRINGER2021

Toward an objective assessment of mobility in clinical and daily activity settings

Arash Atrsaei

Quantification of mobility is the key to monitor the progression of mobility disorders as well as the effect of an intervention. Inertial measurement units (IMUs) with dedicated algorithms can quantify postural transitions and gait as the two key aspects o ...

EPFL2021

From Trees to Barcodes and Back Again: Theoretical and Statistical Perspectives

Kathryn Hess Bellwald, Lida Kanari, Adélie Eliane Garin

Methods of topological data analysis have been successfully applied in a wide range of fields to provide useful summaries of the structure of complex data sets in terms of topological descriptors, such as persistence diagrams. While there are many powerful ...

2020

Three-dimensional electrodes for dielectrophoretic applications

Kevin Keim

This thesis reports the use of metal-coated three-dimensional SU-8 electrodes for dielectrophoretic bio sensing and particle manipulation applications. Placing free standing three-dimensional electrodes in microfluidic channels, electric fields can be appl ...

EPFL2020

Device and method for sorting biological entities

Francesco Mondada, Frank Bonnet, Norbert Crot, Marcin Antoni Sylwestrzak

A device for sorting biological entities is disclosed. The device comprises a channel to canalize the biological entities and a selector having slots to accommodate said entities. Means for detecting and analysing an optical parameter of the biological ent ...

2019

A Fast, Reliable and Wide-voltage-range In-memory Computing Architecture

David Atienza Alonso, William Andrew Simon, Marina Zapater Sancho, Alexandre Sébastien Julien Levisse

In-Memory Computing (IMC) solutions, and particularly bitline computing in SRAM, appear promising as they mitigate one of the most energy consuming aspects in computation: data movement. In this work we propose a fast (2.4Ghz for bitwise operations and 2.4 ...

Association for Computing Machinery2019

The Impact of RDMA on Agreement

Rachid Guerraoui, Mihail Igor Zablotchi, Naama Ben David

Remote Direct Memory Access (RDMA) is becoming widely available in data centers. This technology allows a process to directly read and write the memory of a remote host, with a mechanism to control access permissions. In this paper, we study the fundamenta ...

2019

Particle number control for direct simulation Monte-Carlo methodology using kernel estimates

Mohammadhossein Gorji

The efficiency of stochastic particle schemes for large scale simulations relies on the ability to preserve a uniform distribution of particles in the whole physical domain. While simple particle split and merge algorithms have been considered previously, ...

2019

Efficient Learning from Comparisons

Lucas Maystre

Humans are comparison machines: comparing and choosing an item among a set of alternatives (such as objects or concepts) is arguably one of the most natural ways for us to express our preferences and opinions. In many applications, the analysis of data con ...

EPFL2018

Novel compartment-specific biosensors reveal a complementary subcellular distribution of bioactive Furin and PC7

Pierpaolo Ginefra

Proprotein Convertases (PCs) constitute a family of serine proteases that activate various hormones, growth factors and cell adhesion molecules by mediating endoproteolytic cleavage of their secreted inactive precursors during their transit in the secret ...

EPFL2018

When Stuck, Flip a Coin : New Algorithms for Large-Scale Tasks

Slobodan Mitrovic

Many modern services need to routinely perform tasks on a large scale. This prompts us to consider the following question: How can we design efficient algorithms for large-scale computation? In this thesis, we focus on devising a general strategy to addr ...

EPFL2018

Just Sort It! A Simple and Effective Approach to Active Preference Learning

Matthias Grossglauser, Lucas Maystre

We address the problem of learning a ranking by using adaptively chosen pairwise comparisons. Our goal is to recover the ranking accurately but to sample the comparisons sparingly. If all comparison outcomes are consistent with the ranking, the optimal sol ...

2017

Automated microfluidic sorting of mammalian cells labeled with magnetic microparticles for those that efficiently express and secrete a protein of interest

Nicolas Mermod, Amar Rida, Etienne Lançon, Niamh Harraghy

We developed a method for the fast sorting and selection of mammalian cells expressing and secreting a protein at high levels. This procedure relies on cell capture using an automated microfluidic device handling antibody-coupled magnetic microparticles an ...

Wiley2017

FloDB: Unlocking Memory in Persistent Key-Value Stores

Rachid Guerraoui, Oana Maria Balmau, Mihail Igor Zablotchi, Vasileios Trigonakis

Log-structured merge (LSM) data stores enable to store and process large volumes of data while maintaining good performance. They mitigate the I/O bottleneck by absorbing updates in a memory layer and transferring them to the disk layer in sequential batch ...

2017

Acoustic emission source detection and wave generation on a working plate using piezoelectric actuators

Xinchang Liu

In modern automated assembly lines, part feeders play an important role to separate and sort parts. Agility and flexibility are required to achieve a good yield for different types of parts. The common working principle is to vibrate a working plate driven ...

EPFL2017