Publications associées à Recent Advances of Malaria Parasites Detection Systems Based on Mathematical Morphology

Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets

Volume electron microscopy is the method of choice for the in situ interrogation of cellular ultrastructure at the nanometer scale, and with the increase in large raw image datasets generated, improving computational strategies for image segmentation and s ...

Nature Portfolio2024

Aggregating Spatial and Photometric Context for Photometric Stereo

David Honzátko

Photometric stereo, a computer vision technique for estimating the 3D shape of objects through images captured under varying illumination conditions, has been a topic of research for nearly four decades. In its general formulation, photometric stereo is an ...

EPFL2024

Multidimensional Electron Imaging of Catalyst Layer Materials

Robin Pierre Alain Girod

The proton exchange membrane fuel cell (PEMFC) is an important technology for clean power generation in a decarbonized hydrogen system and is notably envisioned for applications in heavy-duty transportation. However, for cost and performance competitivenes ...

EPFL2023

Segmenting Without Annotating: Crack Segmentation and Monitoring via Post-Hoc Classifier Explanations

Devis Tuia, Hugo Laurent Pascal Porta, Florent Evariste Forest, Olga Fink

Monitoring the cracks in walls, roads and other types of infrastructure is essential to ensure the safety of a structure, and plays an important role in structural health monitoring. Automatic visual inspection allows an efficient, costeffective and safe h ...

Research Publishing2023

Detecting Anomalies and Obstacles in Road Scenes

Krzysztof Maciej Lis

We address the problem of segmenting anomalies and unusual obstacles in road scenes for the purpose of self-driving safety. The objects in question are not present in the common training sets as it is not feasible to collect and annotate examples for every ...

EPFL2023

Self-supervised Dense Representation Learning for Live-Cell Microscopy with Time Arrow Prediction

Max Stieber, Martin Weigert, Benjamin Tobias Gallusser

State-of-the-art object detection and segmentation methods for microscopy images rely on supervised machine learning, which requires laborious manual annotation of training data. Here we present a self-supervised method based on time arrow prediction pre-t ...

Springer International Publishing Ag2023

Potent Virustatic Polymer-Lipid Nanomimics Block Viral Entry and Inhibit Malaria Parasites In Vivo

Francesco Stellacci, Matteo Gasbarri

Infectious diseases continue to pose a substantial burden on global populations, requiring innovative broad-spectrum prophylactic and treatment alternatives. Here, we have designed modular synthetic polymer nanopartides that mimic functional components of ...

AMER CHEMICAL SOC2022

Attribute Prediction as Multiple Instance Learning

Devis Tuia, Diego Marcos Gonzalez

Attribute-based representations help machine learning models perform tasks based on human understandable concepts, allowing a closer human-machine collaboration. However, learning attributes that accurately reflect the content of an image is not always str ...

2022

A Stepwise Domain Adaptive Segmentation Network With Covariate Shift Alleviation for Remote Sensing Imagery

Yunpeng Li, Yinlin Hu, Rui Song, Jingyu Li

Semantic segmentation for remote sensing images (RSI) is critical for the Earth monitoring system. However, the covariate shift between RSI datasets under different capture conditions cannot be alleviated by directly using the unsupervised domain adaptatio ...

IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC2022

NICEdrug.ch, a workflow for rational drug design and systems-level analysis of drug metabolism

Vassily Hatzimanikatis, Noushin Hadadi, Jasmin Maria Hafner, Anush Chiappino-Pepe, Homa Mohammadi Peyhani

The discovery of a drug requires over a decade of intensive research and financial investments – and still has a high risk of failure. To reduce this burden, we developed the NICEdrug.ch resource, which incorporates 250,000 bioactive molecules, and studied ...

2021

Advances In Morphological Neural Networks: Training, Pruning And Enforcing Shape Constraints

Nikolaos Dimitriadis

In this paper, we study an emerging class of neural networks, the Morphological Neural networks, from some modern perspectives. Our approach utilizes ideas from tropical geometry and mathematical morphology. First, we state the training of a binary morphol ...

IEEE2021

Human-Centered Scene Understanding via Crowd Counting

Weizhe Liu

Human-centered scene understanding is the process of perceiving and analysing a dynamic scene observed through a network of sensors with emphasis on human-related activities. It includes the visual perception of human-related activities from either single ...

EPFL2021

Counting People by Estimating People Flows

Pascal Fua, Mathieu Salzmann, Weizhe Liu

Modern methods for counting people in crowded scenes rely on deep networks to estimate people densities in individual images. As such, only very few take advantage of temporal consistency in video sequences, and those that do only impose weak smoothness co ...

2022

Optimization methods and objective functions for analysis of metabolic network models

Zhaleh Hosseini

Computational studies of metabolism aim to systematically analyze the metabolic behaviour of biological systems in different conditions. Genome-scale metabolic network models (GEMs) capture the connection between elements of the network by applying stoichi ...

EPFL2020

Clinical relevance of low-densityPlasmodium falciparumparasitemia in untreated febrile children: A cohort study

Mary-Anne Hartley

Background Low-density (LD)Plasmodiuminfections are missed by standard malaria rapid diagnostic tests (standard mRDT) when the blood antigen concentration is below the detection threshold. The clinical impact of these LD infections is unknown. This study i ...

2020

Image reconstruction for novel time domain near infrared optical tomography: towards clinical applications

Edoardo Charbon, Scott Anthony Lindner, Jingjing Jiang, Chunmin Zhang, Martin Wolf

Near infrared optical tomography (NIROT) is an emerging modality that enables imaging the oxygenation of tissue, which is a biomarker of tremendous clinical relevance. Measuring in reflectance is usually required when NIROT is applied in clinical scenarios ...

2020

HISTOBREAST, a collection of brightfield microscopy images of Haematoxylin and Eosin stained breast tissue

Tiberiu Totu

Modern histopathology workflows rely on the digitization of histology slides. The quality of the resulting digital representations, in the form of histology slide image mosaics, depends on various specific acquisition conditions and on the image processing ...

2020

Evaluating salient object detection in natural images with multiple objects having multi-level saliency

Sabine Süsstrunk, Gökhan Yildirim

Salient object detection is evaluated using binary ground truth (GT) with the labels being salient object class and background. In this study, the authors corroborate based on three subjective experiments on a novel image dataset that objects in natural im ...

2020

Image Clustering Algorithms to Identify Complicated Cerebral Diseases. Description and Comparison

Maria-Alexandra Paun

This article presents two algorithms developed based on two different techniques, from clusterization theory, namely k-means clustering technique and Fuzzy C-means technique, respectively. In this context, the study offers a sustained comparison of the two ...

2020

Targeting liver stage malaria with metformin

Leonardo Filipe Lemos Rocha

Despite an unprecedented 2 decades of success, the combat against malaria - the mosquito-transmitted disease caused by Plasmodium parasites - is no longer progressing. Efforts toward eradication are threatened by the lack of an effective vaccine and a rise ...

2019