Publications associées à Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

Determining an optimum quantity of interleaved instruction streams of defined coroutines

Anastasia Ailamaki, Georgios Psaropoulos

A method for optimizing memory access for database operations is provided. The method may include performing a first database operation by at least executing a first instruction stream associated with the first database operation. The first database opera ...

2023

Efficient Concurrent Analytical Query Processing using Data and Workload-conscious Sharing

Panagiotis Sioulas

Analytical workloads are evolving as the number of users surges and applications that submit queries in batches become popular. However, traditional analytical databases that optimize-then-execute each query individually struggle to provide timely response ...

EPFL2023

Wide-scale identification of novel/eliminated genes responsible for evolutionary transformations

Daria Korotkova

BackgroundIt is generally accepted that most evolutionary transformations at the phenotype level are associated either with rearrangements of genomic regulatory elements, which control the activity of gene networks, or with changes in the amino acid conten ...

2023

Adaptive table placement in NUMA architectures

Anastasia Ailamaki, Iraklis Psaroudakis

Techniques and solutions are provided for performing adaptive database table placement in a non-uniform memory access (NUMA) architecture. The adaptive table placement can occur in response to changing workloads on the NUMA nodes. For example, if a particu ...

2022

Micro-architectural Analysis of Database Workloads

Utku Sirin

Database workloads have significantly evolved in the past twenty years. Traditional database systems that are mainly used to serve Online Transactional Processing (OLTP) workloads evolved into specialized database systems that are optimized for particular ...

EPFL2021

A mechanical approach for the maximum punching resistance of shear-reinforced slab-column connections

Aurelio Muttoni, Miguel Fernández Ruiz, João Tiago Ramos Bernardo de Santa Rita Simões, Diego Hernández Fraile

The use of punching shear reinforcement is currently considered as one of the most convenient practices to enhance the punching shear strength and deformation capacity of slab-column connections in flat slabs. Intensive research has been performed in the l ...

Fédération Internationale du Béton (fib)2021

Contact networks across ages: computational analysis of epidemiological dynamics

Gianrocco Lazzari

For decades mathematical modeling in epidemiology has helped understanding the dynamics of infectious diseases, as well as describe possible intervention scenarios to prevent and control them. However, such models were relying on several assumptions, such ...

EPFL2020

Parallel and Scalable Bioinformatics

Stuart Anthony Byma

The field of genomics is likely to become the largest producer of data as a consequence of the large-scale application of next-generation sequencing technology for biological research and personalized medical treatments. The raw sequence data produced by t ...

EPFL2020

Consolidation of database check constraints

Nikola Obrenovic

Independent modeling of various modules of an information system (IS), and consequently database subschemas, may result in formal or semantic conflicts between the modules being modeled. Such conflicts may cause collisions between the integrated database s ...

2019

Timely and cost-efficient data exploration through adaptive tuning

Matthaios Alexandros Olma

Modern applications accumulate data at an exponentially increasing rate and traditional database systems struggle to keep up. Decision support systems used in industry, rely heavily on data analysis, and require real-time responses irrespective of data siz ...

EPFL2019

HD-Index: Pushing the Scalability-Accuracy Boundary for Approximate kNN Search in High-Dimensional Spaces

Arnab Bhattacharya, Akhil Arora, Piyush Kumar

Nearest neighbor searching of large databases in high-dimensional spaces is inherently difficult due to the curse of dimensionality. A flavor of approximation is, therefore, necessary to practically solve the problem of nearest neighbor search. In this pap ...

ASSOC COMPUTING MACHINERY2018

Benchmarking Touchscreen Biometrics for Mobile Authentication

We study user interaction with touchscreens based on swipe gestures for personal authentication. This approach has been analyzed only recently in the last few years in a series of disconnected and limited works. We summarize those recent efforts and then c ...

2018

SCCER JA-RED - Description of the multi-energy demonstration system in the RE demo site - Deliverable 1.2.1

Luc Girardin, Lionel Benjamin Bloch, Nicolas Würsch, Jordan Holweger, Hervé Tommasi

In the optic of providing guidelines for the optimal integration of renewable energy in a connected multi-energy context, this report presents EPFL - IPESE and EPFL - PV-lab’s common work on the initial assessment of Romande Energie (RE) demonstration site ...

2017

Models and Algorithms in Biological Network Evolution with Modularity

Min Ye

Networks are commonly used to represent key processes in biology; examples include transcriptional regulatory networks, protein-protein interaction (PPI) networks, metabolic networks, etc. Databases store many such networks, as graphs, observed or inferred ...

EPFL2017

Scaling Up Concurrent Analytical Workloads on Multi-Core Servers

Iraklis Psaroudakis

Today, an ever-increasing number of researchers, businesses, and data scientists collect and analyze massive amounts of data in database systems. The database system needs to process the resulting highly concurrent analytical workloads by exploiting modern ...

EPFL2016

Keystroke Biometrics Ongoing Competition

Sébastien Marcel, André Anjos

This paper presents the first Keystroke Biometrics Ongoing Competition (KBOC) organized to establish a reproducible baseline in person authentication using keystroke biometrics. The competition has been developed using the BEAT platform and includes one of ...

2016

From Massive Parallelization to Quantum Computing: Seven Novel Approaches to Query Optimization

Immanuel Trummer

The goal of query optimization is to map a declarative query (describing data to generate) to a query plan (describing how to generate the data) with optimal execution cost. Query optimization is required to support declarative query interfaces. It is a co ...

EPFL2016

The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools

Rouayda Cavin Perier, Philipp Bucher, Giovanna Ambrosini, René Dreos

We present an update of EPDNew (http://epd. vital-it. ch), a recently introduced new part of the Eukaryotic Promoter Database (EPD) which has been described in more detail in a previous NAR Database Issue. EPD is an old database of experimentally character ...

Oxford University Press2015

NoDB: Efficient Query Execution on Raw Data Files

Anastasia Ailamaki, Ioannis Alagiannis, Renata Borovica-Gajic, Miguel Sérgio De Oliveira Branco

As data collections become larger and larger, users are faced with increasing bottlenecks in their data analysis. More data means more time to prepare and to load the data into the database before executing the desired queries. Many applications already av ...

Assoc Computing Machinery2015