Publications associées à Efficient Shape Priors for Spline-Based Snakes

Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets

Volume electron microscopy is the method of choice for the in situ interrogation of cellular ultrastructure at the nanometer scale, and with the increase in large raw image datasets generated, improving computational strategies for image segmentation and s ...

Nature Portfolio2024

Quantitative characterization of the inorganic phosphate gene regulatory networks in S. cerevisiae and bottom up engineering an orthogonal gene network

Shiyu Cheng

Gene regulatory networks (GRNs) play a crucial role in an organism's response to changing environmental conditions. Cellular behaviors typically result from the integration of multiple gene outputs, and their regulation often demands precise control of num ...

EPFL2024

Aggregating Spatial and Photometric Context for Photometric Stereo

David Honzátko

Photometric stereo, a computer vision technique for estimating the 3D shape of objects through images captured under varying illumination conditions, has been a topic of research for nearly four decades. In its general formulation, photometric stereo is an ...

EPFL2024

The multimodality cell segmentation challenge: toward universal solutions

Xin Yang, Bo Wang, Yixin Wang, Jun Ma, Lin Han, Maxime Emmanuel Scheder, Marco Labagnara, Sahand Jamal Rahi, Vojislav Gligorovski, Yao Zhang

Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images. Existing cell segmentation methods are often tailored to specific modalities or require manual interventions to specify hyper-parameters in different experimen ...

Nature Portfolio2024

A Gradient-Gated SPAD Array for Non-Line-of-Sight Imaging

Edoardo Charbon, Francesco Gramuglia, Myung Jae Lee, Jiuxuan Zhao, Pouyan Keshavarzian

Time-resolved non-line-of-sight (NLOS) imaging based on single-photon avalanche diode (SPAD) detectors have demonstrated impressive results in recent years. To acquire adequate number of indirect photons from a hidden scene in the presence of overwhelming ...

Ieee-Inst Electrical Electronics Engineers Inc2024

Mitochondrial nanomotion measured by optical microscopy

Sandor Kasas, María Inés Villalba, Priyanka Parmar

Nanometric scale size oscillations seem to be a fundamental feature of all living organisms on Earth. Their detection usually requires complex and very sensitive devices. However, some recent studies demonstrated that very simple optical microscopes and de ...

Frontiers Media SA2023

Modulation of the nanoscale motion rate of Candida albicans by X-rays

Sandor Kasas, María Inés Villalba

IntroductionPatients undergoing cancer treatment by radiation therapy commonly develop Candida albicans infections (candidiasis). Such infections are generally treated by antifungals that unfortunately also induce numerous secondary effects in the patient. ...

Frontiers Media SA2023

Learning Transformations To Reduce the Geometric Shift in Object Detection

Mathieu Salzmann, Martin Pierre Engilberge, Vidit Vidit

The performance of modern object detectors drops when the test distribution differs from the training one. Most of the methods that address this focus on object appearance changes caused by, e.g., different illumination conditions, or gaps between syntheti ...

Ieee Computer Soc2023

Detecting Anomalies and Obstacles in Road Scenes

Krzysztof Maciej Lis

We address the problem of segmenting anomalies and unusual obstacles in road scenes for the purpose of self-driving safety. The objects in question are not present in the common training sets as it is not feasible to collect and annotate examples for every ...

EPFL2023

Confidence Matters: Applications to Semantic Segmentation

Prabhu Teja Sivaprasad

The successes of deep learning for semantic segmentation can in be, in part, attributed to its scale: a notion that encapsulates the largeness of these computational architectures and the labeled datasets they are trained on. These resource requirements hi ...

EPFL2023

Self-supervised Dense Representation Learning for Live-Cell Microscopy with Time Arrow Prediction

Max Stieber, Martin Weigert, Benjamin Tobias Gallusser

State-of-the-art object detection and segmentation methods for microscopy images rely on supervised machine learning, which requires laborious manual annotation of training data. Here we present a self-supervised method based on time arrow prediction pre-t ...

Springer International Publishing Ag2023

Gait Phase Estimation in Steady Walking: A Comparative Study of Methods Based on the Phase Portrait of the Hip Angle

Mohamed Bouri, Auke Ijspeert, Davide Malatesta, Coline Lugaz, Ali Reza Manzoori, Tian Ye

Accurate real-time estimation of the gait phase (GP) is crucial for many control methods in exoskeletons and prostheses. A class of approaches to GP estimation construct the phase portrait of a segment or joint angle, and use the normalized polar angle of ...

IEEE Xplore2023

Determining crack kinematics from imaged crack patterns

Katrin Beyer, Amir Rezaie, Bryan German Pantoja Rosero, Ketson Roberto Maximiano Dos Santos

Determining the relationship between the cause of damage and the subsequent structural behavior of infrastructure systems requires an accurate characterization of the propagation of cracks, which represents the evolution of the damage state. When no inform ...

2022

MultiMAE: Multi-modal Multi-task Masked Autoencoders

Amir Roshan Zamir, Roman Christian Bachmann, David Mizrahi, Andrei Atanov

We propose a pre-training strategy called Multi-modal Multi-task Masked Autoencoders (MultiMAE). It differs from standard Masked Autoencoding in two key aspects: I) it can optionally accept additional modalities of information in the input besides the RGB ...

SPRINGER INTERNATIONAL PUBLISHING AG2022

Object Priors for Volumetric Image Segmentation

Pamuditha Udaranga Wickramasinghe

Large training datasets have played a vital role in the success of modern deep learning methods in computer vision. But, obtaining sufficient amount of training data is challenging, specially when annotating volumetric images. This is because fully annotat ...

EPFL2022

Equivariant Diffusion for Molecule Generation in 3D

Clément Arthur Yvon Vignac

This work introduces a diffusion model for molecule generation in 3D that is equivariant to Euclidean transformations. Our E(3) Equivariant Diffusion Model (EDM) learns to denoise a diffusion process with an equivariant network that jointly operates on bot ...

JMLR-JOURNAL MACHINE LEARNING RESEARCH2022

A Compressive Sensing Framework for EMI Source Localization Using a Metalens Structure: Localization Beyond the Diffraction Limit

Farhad Rachidi-Haeri, Marcos Rubinstein, Mohammad Azadifar, Hamidreza Karami

In this article, we propose a novel approach for the localization of electromagnetic interference (EMI) sources based on the concept of compressive sensing and metalenses. We show that using the spatial and frequency dispersion offered by the metalens, we ...

2022

Attribute Prediction as Multiple Instance Learning

Devis Tuia, Diego Marcos Gonzalez

Attribute-based representations help machine learning models perform tasks based on human understandable concepts, allowing a closer human-machine collaboration. However, learning attributes that accurately reflect the content of an image is not always str ...

2022

Deep learning-based analysis of multiple sclerosis lesions with high and ultra-high field MRI

Francesco La Rosa

Multiple sclerosis (MS) is the most common demyelinating disease of the central nervous system and affects almost 3 million people worldwide. There is currently no cure for MS, and its symptoms, starting with fatigue and weakness, often progress over time ...

EPFL2022

Improving the Training of Compact Neural Networks for Visual Recognition

Shuxuan Guo

During the Artificial Intelligence (AI) revolution of the past decades, deep neural networks have been widely used and have achieved tremendous success in visual recognition. Unfortunately, deploying deep models is challenging because of their huge model s ...

EPFL2022