Publications associées à Advanced visualization of large datasets for Discrete Element Method simulations

At what spatial scale does natural selection operate? Using multiscale frameworks to calibrate the effects of environmental factors across landscape continuums

Patterns in nature arise from processes interacting across a continuum of spatial scales, where new relationships emerge at each level of investigation. These patterns are nested features encompassing fine-scale local patterns, such as topography and geolo ...

EPFL2024

Orchestrating chromosome conformation capture analysis with Bioconductor

Cyril Matthey-Doret

Genome-wide chromatin conformation capture assays provide formidable insights into the spatial organization of genomes. However, due to the complexity of the data structure, their integration in multi-omics workflows remains challenging. We present data st ...

Nature Research2024

Dataset for a flume experiment on sediment augmentation

Christian Mörtl

Dataset for the paper "Influence of hydrograph shape and sediment augmentation repetition frequency on sediment transport dynamics and bed morphology evolution". It includes coordinates of the defined areas of interest and digital elevation models from the ...

EPFL2022

Downscaling of Historical Wind Fields over Switzerland Using Generative Adversarial Networks

Anthony Christopher Davison, Ophélia Mireille Anna Miralles

Near-surface wind is difficult to estimate using global numerical weather and climate models, because airflow is strongly modified by underlying topography, especially that of a country such as Switzerland. In this article, we use a statistical approach ba ...

2022

Meshing of Spiny Neuronal Morphologies using Union Operators

Felix Schürmann, Marwan Muhammad Ahmed Abdellah, Juan José García Cantero, Alessandro Enrico Foni, Nadir Roman Guerrero, Elvis Boci

Neurons are characterized by thin and long interleaving arborizations in which creating accurate mesh models of their cellular membranes is challenging. While union operators are central for CAD/CAM modeling and computer graphics applications, their applic ...

2022

Finite element method–discrete element method bridging coupling for the modeling of gouge

Jean-François Molinari, Guillaume Anciaux, Manon Eugénie Voisin--Leprince, Antonio Joaquin Garcia Suarez

We discuss the multiscale modeling of a granular material trapped between continuum elastic domains. The amorphous granular region, usually termed “gouge,” is under high confinement pressure, to represent the loading of faults at depth. We model the granul ...

Wiley2023

Multiscale Very High Resolution Topographic Models in Alpine Ecology: Pros and Cons of Airborne LiDAR and Drone-Based Stereo-Photogrammetry Technologies

Stéphane Joost, Aude Rogivue, Estelle Rochat, Kevin Leempoel, Annie Sandrine Guillaume

The vulnerability of alpine environments to climate change presses an urgent need to accurately model and understand these ecosystems. Popularity in the use of digital elevation models (DEMs) to derive proxy environmental variables has increased over the p ...

2021

Perceptual Quality of Point Clouds with application to Compression

Evangelos Alexiou

Modern information technologies and human-centric communication systems employ advanced content representations for richer portrayals of the real world. The newly adopted imaging modalities offer additional information cues and permit the depiction of real ...

EPFL2021

Development of the RAPTOR suite of codes towards real-time reconstruction of JET discharges

Federico Alberto Alfredo Felici

The RAPTOR suite of codes combines real-time model-based predictions of the plasma state with the available diagnostic measurements. Following the work on TCV and ASDEX-Upgrade, this paper presents the implementation of the RAPTOR suite for JET. This suite ...

2021

An Efficient FDTD Method to Calculate Lightning Electromagnetic Fields Over Irregular Terrain Adopting the Moving Computational Domain Technique

Farhad Rachidi-Haeri, Marcos Rubinstein, Mohammad Azadifar, Wenhao Hou, Qilin Zhang

We present an improved finite-difference time domain (FDTD) method based on the moving computational domain technique for the calculation of lightning-generated fields over large-scale irregular terrain. In the improved method, a spatial window moving alon ...

2020

Radial Scope: A New Visualization Tool for Structure-Data Relationships

Communication of data associated with chemical structures in a concise fashion can be challenging. Here, we describe an alternative to the classic substrate table that integrates numerical data with struttural changes. These radial-scopeplots facilitate th ...

2020

The SONATA data format for efficient description of large-scale network models

James Gonzalo King, Juan Bautista Hernando Vieites, Eilif Benjamin Muller, Jean-Denis Georges Emile Courcol, Werner Alfons Hilda Van Geit, Michael Emiel Gevaert, Judit Planas Carbonell, Adrien Michel Achille Devresse

Increasing availability of comprehensive experimental datasets and of high-performance computing resources are driving rapid growth in scale, complexity, and biological realism of computational models in neuroscience. To support construction and simulation ...

2020

On the Efficiency of OpenACC-aided GPU-Based FDTD Approach: Application to Lightning Electromagnetic Fields

Farhad Rachidi-Haeri, Mohammad Azadifar, Hamidreza Karami

An open accelerator (OpenACC)-aided graphics processing unit (GPU)-based finite difference time domain (FDTD) method is presented for the first time for the 3D evaluation of lightning radiated electromagnetic fields along a complex terrain with arbitrary t ...

MDPI2020

Sub-Matrix Factorization for Real-Time Vote Prediction

Patrick Thiran, Matthias Grossglauser, Victor Kristof

We address the problem of predicting aggregate vote outcomes (e.g., national) from partial outcomes (e.g., regional) that are revealed sequentially. We combine matrix factorization techniques and generalized linear models (GLMs) to obtain a flexible, effic ...

2020

On the self-similarity of wind turbine wakes in a complex terrain using large eddy simulation

Arslan Salim Dar

We perform large eddy simulation of flow in a complex terrain under neutral atmospheric stratification. We study the self-similar behavior of a turbine wake as a function of varying terrain complexity and perform comparisons with a flat terrain. By plottin ...

Copernicus GmbH2019

Point cloud quality evaluation: Towards a definition for test conditions

Touradj Ebrahimi, Rafael Xavier Meriade Duarte, Evangelos Alexiou

Recently stakeholders in the area of multimedia representation and transmission have been looking at plenoptic technologies to improve immersive experience. Among these technologies, point clouds denote a volumetric information representation format with i ...

2019

The Fifteenth Data Release of the Sloan Digital Sky Surveys: First Release of MaNGA-derived Quantities, Data Visualization Tools, and Stellar Library

Guillaume Blanc, Johan Comparat, Amy Jones, Yuguang Chen, Anand Stéphane Raichoor, John Wilson, Meng Yang, David Schlegel, Cheng Li, Zheng Zheng, Jiayi Sun

Twenty years have passed since first light for the Sloan Digital Sky Survey (SDSS). Here, we release data taken by the fourth phase of SDSS (SDSS-IV) across its first three years of operation (2014 July-2017 July). This is the third data release for SDSS-I ...

2019

Preferential Deposition of Snow and Dust Over Hills: Governing Processes and Relevant Scales

Marc Parlange, Michael Lehning, Marco Giovanni Giometto, Francesco Comola

Preferential deposition of snow and dust over complex terrain is responsible for a wide range of environmental processes and accounts for a significant source of uncertainty in the surface mass balances of cold and arid regions. Despite the growing body of ...

2019

Comparison of MRI-based automated segmentation methods and functional neurosurgery targeting with direct visualization of the Ventro-intermediate thalamic nucleus at 7T

Jean-Philippe Thiran, Meritxell Bach Cuadra, Elena Najdenovska, José Pedro Rebelo Ferreira Marques, João Pedro Forjaco Jorge, Daniel Gallichan, Constantin Tuleasca

The ventro-intermediate nucleus (Vim), as part of the motor thalamic nuclei, is a commonly used target in functional stereotactic neurosurgery for treatment of drug-resistant tremor. As it cannot be directly visualized on routinely used magnetic resonance ...

Nature Research2019

Visbrain: A Multi-Purpose GPU-Accelerated Open-Source Suite for Multimodal Brain Data Visualization

Raphaël Vallat, Christian O'Reilly

We present Visbrain, a Python open-source package that offers a comprehensive visualization suite for neuroimaging and electrophysiological brain data. Visbrain consists of two levels of abstraction: (1) objects which represent highly configurable neuroori ...

2019