Publication

Light and hydrologic variability as drivers of stream biofilm dynamics in a flume experiment

Publications associées (26)

Biofilm morphogenesis on soft hydrogels

Bacteria often colonize their environment in the form of surface attached multicellular communities called biofilms. Biofilms grow from surface-attached cells that undergo division while self-embedding in a viscoelastic matrix. Biofilms grow at the surface ...

EPFL2023

Material Substrate Physical Properties Control Pseudomonas aeruginosa Biofilm Architecture

Alice Cont, Alexandre Louis André Persat

The biofilm lifestyle is the most widespread survival strategy in the bacterial world. Pseudomonas aeruginosa biofilms cause chronic infections and are highly recalcitrant to antimicrobials. The genetic requirements allowing P. aeruginosa to grow into biof ...

AMER SOC MICROBIOLOGY2023

The biofilm ecology of proglacial floodplain streams

Jade Brandani

Glacial forelands figure among the most dynamic landscapes on Earth, and their formation is currently accelerating given glacier shrinkage. Draining these forelands are streams hosting unique microbial communities, which have the capacity to impact both th ...

EPFL2023

Biofilm formation on human immune cells is a multicellular predation strategy of Vibrio cholerae

Alexandre Louis André Persat, Sofya Mikhaleva

Biofilm formation is generally recognized as a bacterial defense mechanism against environmental threats, including antibiotics, bacteriophages, and leukocytes of the human immune system. Here, we show that for the human pathogen Vibrio cholerae, biofilm f ...

CELL PRESS2023

Validation of GBS plasma turbulence simulation of the TJ-K stellarator

Joaquim Loizu Cisquella, Paolo Ricci

We present a validation of a three-dimensional, two-fluid simulation of plasma turbulence in the TJ-K stellarator, a low temperature plasma experiment ideally suited for turbulence measurements. The simulation is carried out by the GBS code, recently adapt ...

IOP Publishing Ltd2023

Three-dimensional micro-CT images of UV-frozen flow fronts recorded at different flow regimes

Véronique Michaud, Jacobus Gerardus Rudolph Staal

Segmented micro-CT images of flow fronts produced by UV-flow freezing. Front morphologies correspond to capilary-dominated, equilibrated and viscous-dominated flow regimes. ...

Zenodo2023

Archaeal type IV pili stabilize Haloferax volcanii biofilms in flow

Lorenzo Anton-Louis Talà, Pascal Damian Odermatt, Alexandre Louis André Persat

Multicellular communities of contiguous cells attached to solid surfaces called biofilms represent a common microbial strategy to improve resilience in adverse environments.1-3 While bacterial biofilms have been under intense investigation, whether archaea ...

Cell Press2023

Homogeneous Environmental Selection Structures the Bacterial Communities of Benthic Biofilms in Proglacial Floodplain Streams

Leïla Ezzat, Tom Ian Battin, Hannes Markus Peter, Jade Brandani, Tyler Joe Kohler, Stylianos Fodelianakis, Massimo Bourquin, Susheel Bhanu Busi, Grégoire Marie Octave Edouard Michoud

Streams draining proglacial floodplains harbor benthic biofilms comprised of diverse microbial communities. These high-mountain ecosystems are rapidly changing with climate warming, and it is therefore critical to better understand the mechanisms underlyin ...

AMER SOC MICROBIOLOGY2023

The Effects of Spatial Organization and Fluid Flow on the Social Interactions in Microbial Communities

Jeremy Pak Hei Wong

Bacteria often engage in social interactions with neighbouring bacteria. Ecosystems which are subjected to social interactions have been widely studied in well mixed settings such as test tubes, allowing us to identify the cellular components contributing ...

EPFL2023

Viral diversity is linked to bacterial community composition in alpine stream biofilms

Tom Ian Battin, Paraskevi Pramateftaki, Hannes Markus Peter, Meriem Bekliz

Biofilms play pivotal roles in fluvial ecosystems, yet virtually nothing is known about viruses in these communities. Leveraging an optimized sample-to-sequence pipeline, we studied the spatiotemporal turnover of dsDNA viruses associated with stream biofil ...

Springer2022

Advances in the Sensing and Treatment of Wound Biofilms

Hubert Girault, Sorour Darvishi

Wound biofilms represent a particularly challenging problem in modern medicine. They are increasingly antibiotic resistant and can prevent the healing of chronic wounds. However, current treatment and diagnostic options are hampered by the complexity of th ...

Wiley-VCH Verlag GmbH2022

Electrochemical imaging of metabolic activity in tissue and biofilms

Sorour Darvishi

Non-invasive and semi-invasive bioimaging is of great interest for the rapid diagnosis and efficient as well as specific treatments of biological systems affecting human health, such as cancer tissue and biofilms. Electrochemical bioimaging is one of the d ...

EPFL2022

On the Capability of Wall-Modeled Large Eddy Simulations to Predict Particle Dispersion in Complex Turbulent Flows

Mohamed Aly Hashem Mohamed Sayed

Predicting particle transport in turbulent flows has a plethora of applications, some of which are: the transport of atmospheric aerosols, the deposition of blood cells in the arteries of human bodies and the atomization of fuel droplets in combustion cham ...

EPFL2022

Influence of Microplastics on Microbial Structure, Function, and Mechanical Properties of Stream Periphyton

Renata Behra, Kristin Schirmer, Ahmed Tlili

Periphyton is a freshwater biofilm composed of prokaryotic and eukaryotic communities that occupy rocks and sediments, forming the base of the food web and playing a key role in nutrient cycling. Given the large surface that periphyton comprises, it may al ...

FRONTIERS MEDIA SA2022

The influence of the crowding assumptions in biofilm simulations

Vassily Hatzimanikatis, Liliana Angeles Martinez

Author summary In nature, many organisms grow in crowded biofilms that protect against stressful conditions, making their control/eradication a challenge. Modeling these microbial systems is a valuable tool for studying the interactions among cells and exp ...

2021

Theory-based scaling laws of near and far scrape-off layer widths in single-null L-mode discharges

Holger Reimerdes, Jan Horacek, Paolo Ricci, Cedric Kar-Wai Tsui, Maurizio Giacomin, Adriano Stagni

Theory-based scaling laws of the near and far scrape-off layer (SOL) widths are analytically derived for L-mode diverted tokamak discharges by using a two-fluid model. The near SOL pressure and density decay lengths are obtained by leveraging a balance amo ...

IOP Publishing Ltd2021

Data-Driven Reduced-Order Modeling of Convective Heat Transfer in Porous Media

Carlo Fiorina

This work presents a data-driven Reduced-Order Model (ROM) for parametric convective heat transfer problems in porous media. The intrusive Proper Orthogonal Decomposition aided Reduced-Basis (POD-RB) technique is employed to reduce the porous medium formul ...

MDPI2021

Mechanomicrobiology: how bacteria sense and respond to forces

Alexandre Louis André Persat

Microbiology and biophysics are converging to advance our understanding of the mechanobiology of microorganisms. In this Review, Dufrene and Persat discuss the physical forces that bacteria experience in their natural environments and the structures that t ...

NATURE PUBLISHING GROUP2020

Biofilms deform soft surfaces and disrupt epithelia

Tamara Rossy, Alice Cont, Alexandre Louis André Persat

During chronic infections and in microbiota, bacteria predominantly colonize their hosts as multicellular structures called biofilms. A common assumption is that biofilms exclusively interact with their hosts biochemically. However, the contributions of me ...

2020

Scanning PIV of turbulent flows over and through rough porous beds using refractive index matching

Christophe Ancey, Gauthier Paul Daniel Marie Rousseau

This paper presents image velocimetry measurements on turbulent flows adjacent to a permeable bed made of randomly packed glass particles. For measuring flow velocities inside the bed, the refractive index of the glass particles was matched with that of th ...

SPRINGER2020