Publications related to Taxonomy

Mechanism balancing taxonomy

Simon Nessim Henein, Florent Cosandier, Hubert Pierre-Marie Benoît Schneegans

The balancing of mechanisms consists in distributing their moving masses, inertias, and elastic components in order to achieve key mechanical properties, such as the elimination of the shaking forces and moments exported onto their supporting structure or ...

2023

A benchmark dataset for machine learning in ecotoxicology

Kristin Schirmer, Marco Baity-Jesi, Fernando Perez Cruz

The use of machine learning for predicting ecotoxicological outcomes is promising, but underutilized. The curation of data with informative features requires both expertise in machine learning as well as a strong biological and ecotoxicological background, ...

Nature Portfolio2023

Language Model Decoding as Likelihood–Utility Alignment

Boi Faltings, Robert West, Maxime Jean Julien Peyrard, Martin Josifoski, Valentin Hartmann, Debjit Paul, Jiheng Wei, Frano Rajic

A critical component of a successful language generation pipeline is the decoding algorithm. However, the general principles that should guide the choice of a decoding algorithm re- main unclear. Previous works only compare decoding algorithms in narrow sc ...

Assoc Computational Linguistics-Acl2023

Shape Models of Lucy Targets (3548) Eurybates and (21900) Orus from Disk-integrated Photometry

Stephan Hellmich

We use our new light curves, along with historical data, to determine the rotation state, photometric properties, and convex shape models of the targets of the Lucy mission (3548) Eurybates and (21900) Orus. We determine a retrograde spin for both targets, ...

IOP Publishing Ltd2023

A taxonomy of surprise definitions

Wulfram Gerstner, Johanni Michael Brea, Alireza Modirshanechi

Surprising events trigger measurable brain activity and influence human behavior by affecting learning, memory, and decision-making. Currently there is, however, no consensus on the definition of surprise. Here we identify 18 mathematical definitions of su ...

2022

The microbiome of cryospheric ecosystems

Tom Ian Battin, Hannes Markus Peter, Susheel Bhanu Busi, Grégoire Marie Octave Edouard Michoud, Leïla Ezzat, Massimo Bourquin, Tyler Joe Kohler, Stylianos Fodelianakis

The cryosphere includes those parts of Earth where water or soil is frozen, such as snow, ice, glaciers and permafrost soils. Here, the authors present a global inventory of cryospheric microbial communities and their genetic repertoires. ...

Nature Portfolio2022

Taxonomic notes on Caelorrhina Hope, 1841, Coelorrhina Burmeister, 1842 and related genera

Michele De Palma

We here review the taxonomic standing of several generic names in the African Cetoniinae and re-establish Coelorrhina Burmeister, 1842 (= Cyprolais Thomson 1880 syn. nov.) as the first available name for Cetonia quadrimaculata Fabricius, 1781. ...

2021

Assessment of abundance and community composition of benthic macroinvertebrates: recommendations for improved sampling, fixation and extraction of oligochaetes

Benoît Jean Dominique Ferrari, Régis Lionel Vivien

For several decades, the abundance and community structure of benthic macroinvertebrates have been studied to assess the biological quality of aquatic ecosystems. Procedures aiming at studying the whole of macroinvertebrate communities were mainly designed ...

2020

High-throughput DNA barcoding of oligochaetes for abundance-based indices to assess the biological quality of sediments in streams and lakes

Benoît Jean Dominique Ferrari, Régis Lionel Vivien

Aquatic oligochaete communities are valuable indicators of the biological quality of sediments in streams and lakes, but identification of specimens to the species level based on morphological features requires solid expertise in taxonomy and is possible o ...

Nature Research2020

Node Attribute Completion in Knowledge Graphs with Multi-Relational Propagation

Robert West, Eda Bayram, Alberto Garcia Duran

The existing literature on knowledge graph completion mostly focuses on the link prediction task. However, knowledge graphs have an additional incompleteness problem: their nodes possess numerical attributes, whose values are often missing. Our approach, d ...

2021

280 Birds with One Stone: Inducing Multilingual Taxonomies from Wikipedia Using Character-Level Classification

Karl Aberer, Rémi Philippe Lebret, Hamza Harkous, Amit Gupta

We propose a novel fully-automated approach towards inducing multilingual taxonomies fromWikipedia. Given an English taxonomy, our approach first leverages the interlanguage links of Wikipedia to automatically construct training datasets for the is-a relat ...

ASSOC ADVANCEMENT ARTIFICIAL INTELLIGENCE2018

Strain-level diversity drives alternative community types in millimetre-scale granular biofilms

Christof Holliger

Microbial communities are often highly diverse in their composition, both at a coarse-grained taxonomic level, such as genus, and at a highly resolved level, such as strains, within species. This variability can be driven by either extrinsic factors such a ...

NATURE PUBLISHING GROUP2018

Genetic Determinism vs. Phenotypic Plasticity in Protist Morphology

Edward Mitchell, Bjorn Jozef Maria Robroek, Mariusz Lamentowicz, Enrique Lara

Untangling the relationships between morphology and phylogeny is key to building a reliable taxonomy, but is especially challenging for protists, where the existence of cryptic or pseudocryptic species makes finding relevant discriminant traits difficult. ...

Wiley2017

Form - function relationships in dragonfly mandibles under an evolutionary perspective

Alessandra Patera

Functional requirements may constrain phenotypic diversification or foster it. For insect mouthparts, the quantification of the relationship between shape and function in an evolutionary framework remained largely unexplored. Here, the question of a functi ...

Royal Soc2017

Taxonomic and functional turnover are decoupled in European peat bogs

Alexandre Buttler, Luca Bragazza, Vincent Eric Jules Jassey, Bjorn Jozef Maria Robroek

In peatland ecosystems, plant communities mediate a globally significant carbon store. The effects of global environmental change on plant assemblages are expected to be a factor in determining how ecosystem functions such as carbon uptake will respond. Us ...

Springer Nature2017

Contrasting processes drive alpha and beta taxonomic, functional and phylogenetic diversity of orthopteran communities in grasslands

François Gillet, Bertrand Fournier

Taxonomic, functional and phylogenetic diversities can respond differently to biotic and abiotic filters. However, biodiversity management tends to focus on a single index, generally taxonomic diversity, assuming a strong positive correlation among biodive ...

Elsevier Science Bv2017

Revisiting Taxonomy Induction over Wikipedia

Amit Gupta

Guided by multiple heuristics, a unified taxonomy of entities and categories is distilled from the Wikipedia category network. A comprehensive evaluation, based on the analysis of upward generalization paths, demonstrates that the taxonomy supports general ...

2016

Mitigating Crime Risks in the International Logistics Network : the Case of Swiss Post

Toni Antero Männistö

The terrorist attacks of September 11, 2001 raised major concerns about the vulnerability of global transportation systems to transnational crime and terrorism. Although the attacks occurred in the context of passenger transport, they spurred unprecedented ...

EPFL2015

A taxonomy of demand uncensoring methods in revenue management

Shadi Sharif Azadeh

Revenue management systems rely on customer data, and are thus affected by the absence of registered demand that arises when a product is no longer available. In the present work, we review the uncensoring (or unconstraining) techniques that have been prop ...

2014

Contrasted taxonomic, phylogenetic and functional diversity patterns in semi-natural permanent grasslands along an altitudinal gradient

François Gillet

Background and aims - Recent methodological and theoretical advances in community ecology have allowed more robust exploration of complementary facets of biodiversity in plant communities. Focusing on semi-natural permanent grasslands of the French Jura Mo ...

Soc Royal Botan Belgique2014