Publications associées à Taxonomie

Mechanism balancing taxonomy

Simon Nessim Henein, Florent Cosandier, Hubert Pierre-Marie Benoît Schneegans

The balancing of mechanisms consists in distributing their moving masses, inertias, and elastic components in order to achieve key mechanical properties, such as the elimination of the shaking forces and moments exported onto their supporting structure or ...

2023

Shape Models of Lucy Targets (3548) Eurybates and (21900) Orus from Disk-integrated Photometry

Stephan Hellmich

We use our new light curves, along with historical data, to determine the rotation state, photometric properties, and convex shape models of the targets of the Lucy mission (3548) Eurybates and (21900) Orus. We determine a retrograde spin for both targets, ...

IOP Publishing Ltd2023

Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters

Tom Ian Battin, Hannes Markus Peter, Susheel Bhanu Busi, Grégoire Marie Octave Edouard Michoud, Leïla Ezzat, Massimo Bourquin, Matteo Tolosano, Paraskevi Pramateftaki, Vincent Henri De Staercke, Tyler Joe Kohler, Michail Styllas, Stylianos Fodelianakis

Antimicrobial resistance is an omnipresent phenomenon in the anthropogenically influenced ecosystems. However, its role in shaping microbial community dynamics in pristine environments is relatively unknown. ...

AMER SOC MICROBIOLOGY2023

Language Model Decoding as Likelihood–Utility Alignment

Boi Faltings, Robert West, Maxime Jean Julien Peyrard, Martin Josifoski, Valentin Hartmann, Debjit Paul, Jiheng Wei, Frano Rajic

A critical component of a successful language generation pipeline is the decoding algorithm. However, the general principles that should guide the choice of a decoding algorithm re- main unclear. Previous works only compare decoding algorithms in narrow sc ...

Assoc Computational Linguistics-Acl2023

Surprise and novelty in the brain

Wulfram Gerstner, Johanni Michael Brea, Alireza Modirshanechi, Sophia Becker

Notions of surprise and novelty have been used in various experimental and theoretical studies across multiple brain areas and species. However, 'surprise' and 'novelty' refer to different quantities in different studies, which raises concerns about whethe ...

CURRENT BIOLOGY LTD2023

The microbiome of cryospheric ecosystems

Tom Ian Battin, Hannes Markus Peter, Susheel Bhanu Busi, Grégoire Marie Octave Edouard Michoud, Leïla Ezzat, Massimo Bourquin, Tyler Joe Kohler, Stylianos Fodelianakis

The cryosphere includes those parts of Earth where water or soil is frozen, such as snow, ice, glaciers and permafrost soils. Here, the authors present a global inventory of cryospheric microbial communities and their genetic repertoires. ...

Nature Portfolio2022

A taxonomy of surprise definitions

Wulfram Gerstner, Johanni Michael Brea, Alireza Modirshanechi

Surprising events trigger measurable brain activity and influence human behavior by affecting learning, memory, and decision-making. Currently there is, however, no consensus on the definition of surprise. Here we identify 18 mathematical definitions of su ...

2022

Taxonomic notes on Caelorrhina Hope, 1841, Coelorrhina Burmeister, 1842 and related genera

Michele De Palma

We here review the taxonomic standing of several generic names in the African Cetoniinae and re-establish Coelorrhina Burmeister, 1842 (= Cyprolais Thomson 1880 syn. nov.) as the first available name for Cetonia quadrimaculata Fabricius, 1781. ...

2021

Taxonomic revision of the Eudicella White, 1839 complex, with description of three new subgenera

Michele De Palma

Morphological and DNA barcoding analysis of representative taxa in the Eudicella White complex identified five distinct subgenera, three of which are established herein: Eudicella (Coelorrhinella) n. subg., Eudicella (Aneurhina) n. subg., and Eudicella (Ce ...

2021

Barcoding analysis and taxonomic revision of Goliathus Lamarck, 1802 (Scarabaeidae, Cetoniinae)

Michele De Palma

We conducted barcoding analysis of valid taxa in the genus Goliathus Lamarck, 1802 and clarified their relationships. Specimens of Goliathus goliatus (Drury, 1770) sampled in tropical rainforests from Cameroon to Kenya display degrees of genetic and phenot ...

2020

High-throughput DNA barcoding of oligochaetes for abundance-based indices to assess the biological quality of sediments in streams and lakes

Benoît Jean Dominique Ferrari, Régis Lionel Vivien

Aquatic oligochaete communities are valuable indicators of the biological quality of sediments in streams and lakes, but identification of specimens to the species level based on morphological features requires solid expertise in taxonomy and is possible o ...

Nature Research2020

Assessment of abundance and community composition of benthic macroinvertebrates: recommendations for improved sampling, fixation and extraction of oligochaetes

Benoît Jean Dominique Ferrari, Régis Lionel Vivien

For several decades, the abundance and community structure of benthic macroinvertebrates have been studied to assess the biological quality of aquatic ecosystems. Procedures aiming at studying the whole of macroinvertebrate communities were mainly designed ...

2020

Microbial Ecology of Methanotrophy in Streams Along a Gradient of CH4 Availability

Tom Ian Battin, Hannes Markus Peter, Paraskevi Pramateftaki, Alexandre Bagnoud

Despite the recognition of streams and rivers as sources of methane (CH4) to the atmosphere, the role of CH4 oxidation (MOX) in these ecosystems remains poorly understood to date. Here, we measured the kinetics of MOX in stream sediments of 14 sites to res ...

Frontiers Media SA2020

Multi-omics reveals abundant mitochondrial genomic and circadian expression variation in the Drosophila Genetic Reference Panel

Maria Litovchenko

Modern biology rapidly generates a wealth of data,which can only be analysed computationally.Despite the variety of available data types,most of them aim to provide an answer to one question: how does genotypic diversity translates into phenotypes? This qu ...

EPFL2020

Combined use of airborne laser scanning and hyperspectral imaging for forest inventories

Matthew Josef Parkan

The thesis presented hereby proposes as a general objective the estimation of forest inventory parameters (e.g. trunk location, height, basal area, crown area, species, etc..) from the combination of Airborne Laser Scanning (ALS) and Hyperspectal Imaging ( ...

EPFL2019

Jumping dynamics of aquatic animals

Emmanuel Georges Albert Virot

Jumping out of water is a phenomenon exhibited by a variety of aquatic and semi-aquatic animals. Yet, there is no common groundwork that clarifies the physical constraints required to jump out of water. In this study, we elucidate the physical conditions r ...

ROYAL SOC2019

Taxonomic revision of genus Fornasinius Bertoloni, 1853 with description of new taxa (Scarabaeidae: Cetoniinae)

Michele De Palma

The genus Fornasinius was established in 1853 by Giuseppe BERTOLONI to receive a taxon that was sufficiently distinct from the known representatives of the genus Goliathus Lamarck, 1801, to merit a different placement. Here, the type species of the genus, ...

2018

280 Birds with One Stone: Inducing Multilingual Taxonomies from Wikipedia Using Character-Level Classification

Karl Aberer, Rémi Philippe Lebret, Hamza Harkous, Amit Gupta

We propose a novel fully-automated approach towards inducing multilingual taxonomies fromWikipedia. Given an English taxonomy, our approach first leverages the interlanguage links of Wikipedia to automatically construct training datasets for the is-a relat ...

ASSOC ADVANCEMENT ARTIFICIAL INTELLIGENCE2018

Strain-level diversity drives alternative community types in millimetre-scale granular biofilms

Christof Holliger

Microbial communities are often highly diverse in their composition, both at a coarse-grained taxonomic level, such as genus, and at a highly resolved level, such as strains, within species. This variability can be driven by either extrinsic factors such a ...

NATURE PUBLISHING GROUP2018

Genetic Determinism vs. Phenotypic Plasticity in Protist Morphology

Edward Mitchell, Bjorn Jozef Maria Robroek, Mariusz Lamentowicz, Enrique Lara

Untangling the relationships between morphology and phylogeny is key to building a reliable taxonomy, but is especially challenging for protists, where the existence of cryptic or pseudocryptic species makes finding relevant discriminant traits difficult. ...

Wiley2017